miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10295 3' -46 NC_002687.1 + 624 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 1151 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 1677 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 3028 0.74 0.996066
Target:  5'- cGCcUCCAAGUUUCCcaugCAUGCGGCGa -3'
miRNA:   3'- -CGaAGGUUUAAAGGca--GUGCGUUGUg -5'
10295 3' -46 NC_002687.1 + 12984 0.67 1
Target:  5'- aUUUCUAAAUUUCCcccaucauGUCGCGCcuCAUu -3'
miRNA:   3'- cGAAGGUUUAAAGG--------CAGUGCGuuGUG- -5'
10295 3' -46 NC_002687.1 + 20977 0.66 1
Target:  5'- uGCUcUCCGAAggcgCCG--AUGCAACACu -3'
miRNA:   3'- -CGA-AGGUUUaaa-GGCagUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 22172 0.67 1
Target:  5'- aGCaUUCAGGcagugUCCGUCGCGCAuUAUg -3'
miRNA:   3'- -CGaAGGUUUaa---AGGCAGUGCGUuGUG- -5'
10295 3' -46 NC_002687.1 + 25831 1.15 0.026853
Target:  5'- aGCUUCCAAAUUUCCGUCACGCAACACg -3'
miRNA:   3'- -CGAAGGUUUAAAGGCAGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 32487 0.68 0.999998
Target:  5'- ---aUCGAGUUUUCGUaCACGCGACu- -3'
miRNA:   3'- cgaaGGUUUAAAGGCA-GUGCGUUGug -5'
10295 3' -46 NC_002687.1 + 32700 0.66 1
Target:  5'- -aUUCUgucaAAAUUgggguaGUCGCGCAGCACg -3'
miRNA:   3'- cgAAGG----UUUAAagg---CAGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 35108 0.66 1
Target:  5'- ---aCCAuggaUUCCGUCAgGCuuuGCGCg -3'
miRNA:   3'- cgaaGGUuua-AAGGCAGUgCGu--UGUG- -5'
10295 3' -46 NC_002687.1 + 39739 0.76 0.985759
Target:  5'- cGCUUUCAAuGUUUCCGUCgaagaccuuguugaACGCcGCACg -3'
miRNA:   3'- -CGAAGGUU-UAAAGGCAG--------------UGCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 46332 0.66 1
Target:  5'- uGCUcUUCAAucgUCCauGUCACuGCGACACc -3'
miRNA:   3'- -CGA-AGGUUuaaAGG--CAGUG-CGUUGUG- -5'
10295 3' -46 NC_002687.1 + 46463 0.66 1
Target:  5'- cUUUCCAGccugacacUUUCCGUUuuGUAGCACg -3'
miRNA:   3'- cGAAGGUUu-------AAAGGCAGugCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 61597 0.66 1
Target:  5'- gGCUUUCGGca-UCCGgCACGUAcACACa -3'
miRNA:   3'- -CGAAGGUUuaaAGGCaGUGCGU-UGUG- -5'
10295 3' -46 NC_002687.1 + 61758 0.71 0.999874
Target:  5'- uCUUCCAGAcaucggCCGUCcuCGCGGCAUu -3'
miRNA:   3'- cGAAGGUUUaaa---GGCAGu-GCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 70178 0.7 0.999968
Target:  5'- cGCUU-CAGAUguccauaCCG-CGCGCAACGCu -3'
miRNA:   3'- -CGAAgGUUUAaa-----GGCaGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 83310 0.67 1
Target:  5'- aGCUUCUAcggcaucCCGUCGgcuaGCGACACc -3'
miRNA:   3'- -CGAAGGUuuaaa--GGCAGUg---CGUUGUG- -5'
10295 3' -46 NC_002687.1 + 93576 0.66 1
Target:  5'- cGCcgUCGAcuAUUUCCGUCAUcaCAACACc -3'
miRNA:   3'- -CGaaGGUU--UAAAGGCAGUGc-GUUGUG- -5'
10295 3' -46 NC_002687.1 + 97210 0.69 0.999987
Target:  5'- cGCgaCCGGGgcgUCCGgaaCACGgGACACa -3'
miRNA:   3'- -CGaaGGUUUaa-AGGCa--GUGCgUUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.