miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10295 3' -46 NC_002687.1 + 334803 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 334241 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 333678 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 333004 0.67 0.999999
Target:  5'- --aUCgCGAGcUUCCuGUUGCGCAACGCc -3'
miRNA:   3'- cgaAG-GUUUaAAGG-CAGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 328316 0.69 0.999991
Target:  5'- --aUCCAGAaa-CUGaUCAUGCAGCACg -3'
miRNA:   3'- cgaAGGUUUaaaGGC-AGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 313012 0.66 1
Target:  5'- uCUUCCucgaccgCgGUCACGCGAC-Cg -3'
miRNA:   3'- cGAAGGuuuaaa-GgCAGUGCGUUGuG- -5'
10295 3' -46 NC_002687.1 + 309053 0.75 0.992866
Target:  5'- aGCUUUgAAGUgagccuggCCGUCGUGCAGCACg -3'
miRNA:   3'- -CGAAGgUUUAaa------GGCAGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 302000 0.67 0.999999
Target:  5'- aGUUUCCAAAgaUCCcagGUUuuGCGCGAgGCa -3'
miRNA:   3'- -CGAAGGUUUaaAGG---CAG--UGCGUUgUG- -5'
10295 3' -46 NC_002687.1 + 301824 0.66 1
Target:  5'- gGCUUCCAugggcuUUUCCcuuagCACGUcgagAACGCa -3'
miRNA:   3'- -CGAAGGUuu----AAAGGca---GUGCG----UUGUG- -5'
10295 3' -46 NC_002687.1 + 301503 0.66 1
Target:  5'- uGC-UCCAAGacagagcgUUCCGUCACG-GACAg -3'
miRNA:   3'- -CGaAGGUUUa-------AAGGCAGUGCgUUGUg -5'
10295 3' -46 NC_002687.1 + 297912 0.67 1
Target:  5'- gGCUUCgGcuccagCCG-CACGCAACAa -3'
miRNA:   3'- -CGAAGgUuuaaa-GGCaGUGCGUUGUg -5'
10295 3' -46 NC_002687.1 + 279532 0.67 0.999999
Target:  5'- cGCUUCCGGcaccgCCGcUGCGCAcGCGCu -3'
miRNA:   3'- -CGAAGGUUuaaa-GGCaGUGCGU-UGUG- -5'
10295 3' -46 NC_002687.1 + 268673 0.67 1
Target:  5'- uCUUCUcucaccaCGUCGCGUAGCACu -3'
miRNA:   3'- cGAAGGuuuaaagGCAGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 266357 0.66 1
Target:  5'- aGUUUCgCAAGgucUUCCGUUuccCGCuGCACg -3'
miRNA:   3'- -CGAAG-GUUUa--AAGGCAGu--GCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 263756 0.7 0.999943
Target:  5'- -aUUCCAGuacucuAUUaCCuUCGCGCAGCACg -3'
miRNA:   3'- cgAAGGUU------UAAaGGcAGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 262287 0.67 0.999999
Target:  5'- aCUUCgCGGAUga-UGUCuCGCGACACa -3'
miRNA:   3'- cGAAG-GUUUAaagGCAGuGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 259912 0.7 0.999925
Target:  5'- uGUUUgcUCAAGUUgCCGgcgcCGCGCAACACg -3'
miRNA:   3'- -CGAA--GGUUUAAaGGCa---GUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 259039 0.66 1
Target:  5'- -aUUCCAcgcucaUCCGcCGCGCGACGa -3'
miRNA:   3'- cgAAGGUuuaa--AGGCaGUGCGUUGUg -5'
10295 3' -46 NC_002687.1 + 256519 0.66 1
Target:  5'- cGCUcUCCGAGUagaCGUCGCG--GCACa -3'
miRNA:   3'- -CGA-AGGUUUAaagGCAGUGCguUGUG- -5'
10295 3' -46 NC_002687.1 + 252710 0.69 0.999983
Target:  5'- --aUUCGAucggCCGUCGCGCGGCGu -3'
miRNA:   3'- cgaAGGUUuaaaGGCAGUGCGUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.