miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10295 3' -46 NC_002687.1 + 107257 0.7 0.999968
Target:  5'- cGUUUCCAAAg--UCGUCAuUGCGGCGg -3'
miRNA:   3'- -CGAAGGUUUaaaGGCAGU-GCGUUGUg -5'
10295 3' -46 NC_002687.1 + 110407 0.66 1
Target:  5'- ---aCCAAAUc-CCGUCGuCGaCAGCACa -3'
miRNA:   3'- cgaaGGUUUAaaGGCAGU-GC-GUUGUG- -5'
10295 3' -46 NC_002687.1 + 115156 0.69 0.999987
Target:  5'- --aUCuCAcGUcUCCGUC-CGCAACGCa -3'
miRNA:   3'- cgaAG-GUuUAaAGGCAGuGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 121493 0.67 0.999999
Target:  5'- -aUUCCGAGggUUCCGcCACGgGcCACg -3'
miRNA:   3'- cgAAGGUUUa-AAGGCaGUGCgUuGUG- -5'
10295 3' -46 NC_002687.1 + 128060 0.66 1
Target:  5'- aGCUUUCuuAUUUCCGagAgGC-ACGCu -3'
miRNA:   3'- -CGAAGGuuUAAAGGCagUgCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 134785 0.69 0.999991
Target:  5'- -aUUCUAGAaacgaacUCCGUUACGCAaaACGCa -3'
miRNA:   3'- cgAAGGUUUaa-----AGGCAGUGCGU--UGUG- -5'
10295 3' -46 NC_002687.1 + 156425 0.7 0.999903
Target:  5'- gGCU-CCGAuAUUUUCGUC-CGCAAUGCc -3'
miRNA:   3'- -CGAaGGUU-UAAAGGCAGuGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 158482 0.69 0.999973
Target:  5'- aCUUCaucuccgCCGUCGCGCAGCuCa -3'
miRNA:   3'- cGAAGguuuaaaGGCAGUGCGUUGuG- -5'
10295 3' -46 NC_002687.1 + 161854 0.78 0.963852
Target:  5'- --aUCCAccuUUUCCGUCACGUcGCGCa -3'
miRNA:   3'- cgaAGGUuu-AAAGGCAGUGCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 176111 0.67 0.999999
Target:  5'- aCUUCCAAucUUUCCGuauucgaugacgUCAUGCccuGGCACg -3'
miRNA:   3'- cGAAGGUUu-AAAGGC------------AGUGCG---UUGUG- -5'
10295 3' -46 NC_002687.1 + 176615 0.68 0.999998
Target:  5'- cGCUUCCGAAcaguagauacaaGcUCACGUAACACa -3'
miRNA:   3'- -CGAAGGUUUaaagg-------C-AGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 205062 0.7 0.999957
Target:  5'- aGCUgUCCAGAUUcUCCGgacUCACggGCGACAUu -3'
miRNA:   3'- -CGA-AGGUUUAA-AGGC---AGUG--CGUUGUG- -5'
10295 3' -46 NC_002687.1 + 205140 0.7 0.999903
Target:  5'- aCUUCCGcgca-CCGUCGCGCcguACACc -3'
miRNA:   3'- cGAAGGUuuaaaGGCAGUGCGu--UGUG- -5'
10295 3' -46 NC_002687.1 + 235113 0.66 1
Target:  5'- uGCUUCCGGGg--CCGUC-CGgGAUg- -3'
miRNA:   3'- -CGAAGGUUUaaaGGCAGuGCgUUGug -5'
10295 3' -46 NC_002687.1 + 239437 0.67 0.999999
Target:  5'- cCUUCCc-GUUUCCcUCaaucaACGCGACGCa -3'
miRNA:   3'- cGAAGGuuUAAAGGcAG-----UGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 244412 0.66 1
Target:  5'- aGCgugaCAuuuUUUUCGUCACGCucCACa -3'
miRNA:   3'- -CGaag-GUuu-AAAGGCAGUGCGuuGUG- -5'
10295 3' -46 NC_002687.1 + 247451 0.66 1
Target:  5'- gGC-UCCGAAcuucugCCGUCuCGCGuccGCACa -3'
miRNA:   3'- -CGaAGGUUUaaa---GGCAGuGCGU---UGUG- -5'
10295 3' -46 NC_002687.1 + 247771 0.66 1
Target:  5'- ---gCCAAGUUUUac-CGCGCGGCGCg -3'
miRNA:   3'- cgaaGGUUUAAAGgcaGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 249523 0.72 0.999201
Target:  5'- aGCgUCCAAucg-CCGUCggccuugACGCGGCGCa -3'
miRNA:   3'- -CGaAGGUUuaaaGGCAG-------UGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 251771 0.66 1
Target:  5'- -gUUCCAAAcauacacucucgauUUUCCGgugCGCGCGucCACu -3'
miRNA:   3'- cgAAGGUUU--------------AAAGGCa--GUGCGUu-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.