miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10296 5' -52 NC_002687.1 + 212057 0.68 0.996764
Target:  5'- cUCAAA-GUCC--UGCGUCCGCUggucgCCCUu -3'
miRNA:   3'- -GGUUUgCAGGuaACGCAGGUGA-----GGGG- -5'
10296 5' -52 NC_002687.1 + 249856 0.68 0.996764
Target:  5'- gUCGAACGUCC----UGUCCGC-CCUCa -3'
miRNA:   3'- -GGUUUGCAGGuaacGCAGGUGaGGGG- -5'
10296 5' -52 NC_002687.1 + 117324 0.68 0.996764
Target:  5'- -aAAACGUCC-UUGCGUaCUACgaCUCCg -3'
miRNA:   3'- ggUUUGCAGGuAACGCA-GGUGa-GGGG- -5'
10296 5' -52 NC_002687.1 + 31774 0.68 0.996764
Target:  5'- gCCGAAauUCCAUUGCuGUCUACaUCCa- -3'
miRNA:   3'- -GGUUUgcAGGUAACG-CAGGUG-AGGgg -5'
10296 5' -52 NC_002687.1 + 225983 0.68 0.996764
Target:  5'- cUCGAcCGcCCAccggUGCGUCCuccACUCCuCCg -3'
miRNA:   3'- -GGUUuGCaGGUa---ACGCAGG---UGAGG-GG- -5'
10296 5' -52 NC_002687.1 + 303245 0.68 0.99723
Target:  5'- gCCAAGCGcCCGca--G-CCAUUCCCCu -3'
miRNA:   3'- -GGUUUGCaGGUaacgCaGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 135243 0.68 0.99723
Target:  5'- gCCAGAUGUCCccGUUGCcaaaCCGCUgCaCCg -3'
miRNA:   3'- -GGUUUGCAGG--UAACGca--GGUGAgG-GG- -5'
10296 5' -52 NC_002687.1 + 297972 0.68 0.99723
Target:  5'- aCAAACGcCC-UUGCGUugcggccgccaCCGCUUCCg -3'
miRNA:   3'- gGUUUGCaGGuAACGCA-----------GGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 27099 0.67 0.997996
Target:  5'- gCCAGGCaGUCCGUagugauUGuUGUCCACaacaCCCUg -3'
miRNA:   3'- -GGUUUG-CAGGUA------AC-GCAGGUGa---GGGG- -5'
10296 5' -52 NC_002687.1 + 34220 0.67 0.998307
Target:  5'- -gAAGCuUCCAUggGUGUCCuuCUCCCg -3'
miRNA:   3'- ggUUUGcAGGUAa-CGCAGGu-GAGGGg -5'
10296 5' -52 NC_002687.1 + 87990 0.67 0.998576
Target:  5'- -aAGACGUCgAc-GUGUCCAgcgaacucuucCUCCCCg -3'
miRNA:   3'- ggUUUGCAGgUaaCGCAGGU-----------GAGGGG- -5'
10296 5' -52 NC_002687.1 + 170632 0.67 0.998576
Target:  5'- uCCGAcaACGagUCGUUGuUGUCCuACUCCUCa -3'
miRNA:   3'- -GGUU--UGCa-GGUAAC-GCAGG-UGAGGGG- -5'
10296 5' -52 NC_002687.1 + 293750 0.67 0.998576
Target:  5'- -aAGAUGaUCU-UUGCGUCCuGCUCCCg -3'
miRNA:   3'- ggUUUGC-AGGuAACGCAGG-UGAGGGg -5'
10296 5' -52 NC_002687.1 + 149104 0.67 0.998576
Target:  5'- aCCGucGCGUCCAaUG-GaaCACUCCCUg -3'
miRNA:   3'- -GGUu-UGCAGGUaACgCagGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 50705 0.67 0.998576
Target:  5'- gCCAca-GUCCg--GCGcugaaagaUCCACUCCCUc -3'
miRNA:   3'- -GGUuugCAGGuaaCGC--------AGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 86044 0.67 0.998576
Target:  5'- gCCAGACGggCC--UGUGUCacccuuUUCCCCg -3'
miRNA:   3'- -GGUUUGCa-GGuaACGCAGgu----GAGGGG- -5'
10296 5' -52 NC_002687.1 + 153893 0.67 0.998808
Target:  5'- gCAAACGUCg---GCGUCCACaCCa- -3'
miRNA:   3'- gGUUUGCAGguaaCGCAGGUGaGGgg -5'
10296 5' -52 NC_002687.1 + 165046 0.67 0.998808
Target:  5'- aCGAACGUCCcc-GCGUCUccguCUaCCUCa -3'
miRNA:   3'- gGUUUGCAGGuaaCGCAGGu---GA-GGGG- -5'
10296 5' -52 NC_002687.1 + 194128 0.66 0.998989
Target:  5'- gUCAAcgcCGUCCGccUGCGcCCGCUcguuuggCCCCg -3'
miRNA:   3'- -GGUUu--GCAGGUa-ACGCaGGUGA-------GGGG- -5'
10296 5' -52 NC_002687.1 + 154514 0.66 0.999007
Target:  5'- ---uGCGUCUucUGCGUCCuCUCCg- -3'
miRNA:   3'- gguuUGCAGGuaACGCAGGuGAGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.