miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10296 5' -52 NC_002687.1 + 25940 1.15 0.007879
Target:  5'- uCCAAACGUCCAUUGCGUCCACUCCCCa -3'
miRNA:   3'- -GGUUUGCAGGUAACGCAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 227085 0.78 0.731528
Target:  5'- aCCcuGCGUCCAcacGCGUCCGCgUCCaCCg -3'
miRNA:   3'- -GGuuUGCAGGUaa-CGCAGGUG-AGG-GG- -5'
10296 5' -52 NC_002687.1 + 151014 0.77 0.803035
Target:  5'- aCCAAACGUCCAUcgaccguuuuccaUGCGUacuCUCCCg -3'
miRNA:   3'- -GGUUUGCAGGUA-------------ACGCAgguGAGGGg -5'
10296 5' -52 NC_002687.1 + 22035 0.73 0.946915
Target:  5'- uCCuucAugGUCU----CGUCCGCUCCCCa -3'
miRNA:   3'- -GGu--UugCAGGuaacGCAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 212126 0.72 0.954831
Target:  5'- aCCAAA-GUCCAUcUGCaG-CCACUCgCCCa -3'
miRNA:   3'- -GGUUUgCAGGUA-ACG-CaGGUGAG-GGG- -5'
10296 5' -52 NC_002687.1 + 134123 0.71 0.976145
Target:  5'- cCCAccAUGUCCA---UGUCCuGCUCCCCa -3'
miRNA:   3'- -GGUu-UGCAGGUaacGCAGG-UGAGGGG- -5'
10296 5' -52 NC_002687.1 + 10753 0.71 0.978444
Target:  5'- aCCAcggucGCGUCCGcUGCcuucUCCAC-CCCCg -3'
miRNA:   3'- -GGUu----UGCAGGUaACGc---AGGUGaGGGG- -5'
10296 5' -52 NC_002687.1 + 70778 0.7 0.980576
Target:  5'- -gAGACaacacCCAUUGuCG-CCACUCCCCg -3'
miRNA:   3'- ggUUUGca---GGUAAC-GCaGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 217013 0.7 0.980576
Target:  5'- cCCuuAUcUCCGgcGUGUCCAC-CCCCa -3'
miRNA:   3'- -GGuuUGcAGGUaaCGCAGGUGaGGGG- -5'
10296 5' -52 NC_002687.1 + 237246 0.7 0.98603
Target:  5'- gCuuGCGUCCuUUGCGUCCAaccggggacCUCCa- -3'
miRNA:   3'- gGuuUGCAGGuAACGCAGGU---------GAGGgg -5'
10296 5' -52 NC_002687.1 + 42674 0.7 0.988955
Target:  5'- -uGGACGUCCGcUGCGaCCGaccaUCCCUc -3'
miRNA:   3'- ggUUUGCAGGUaACGCaGGUg---AGGGG- -5'
10296 5' -52 NC_002687.1 + 200901 0.69 0.990932
Target:  5'- cCCGAGCGucgacgucggcUCCAgccuucaggagcaUGCGaCCACUUCCCu -3'
miRNA:   3'- -GGUUUGC-----------AGGUa------------ACGCaGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 11063 0.69 0.992422
Target:  5'- aCCAcacacAACGcccgCCAUgcugagaGCGUCCGCUUCCg -3'
miRNA:   3'- -GGU-----UUGCa---GGUAa------CGCAGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 88205 0.69 0.992422
Target:  5'- gCAAugGUCaCAggugucgUGCuUCUACUCUCCg -3'
miRNA:   3'- gGUUugCAG-GUa------ACGcAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 331156 0.69 0.993363
Target:  5'- gCCAuGCcUCCccaacugccGCGUCCGgUCCCCg -3'
miRNA:   3'- -GGUuUGcAGGuaa------CGCAGGUgAGGGG- -5'
10296 5' -52 NC_002687.1 + 39559 0.69 0.993363
Target:  5'- uUCuguCGcCCAUUugacaaucGaCGUCCGCUCCCCu -3'
miRNA:   3'- -GGuuuGCaGGUAA--------C-GCAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 296776 0.69 0.994127
Target:  5'- gUCAAACGUCCGUUgaugagggucGUGUCCAUcgaggcaccggagUCCUg -3'
miRNA:   3'- -GGUUUGCAGGUAA----------CGCAGGUG-------------AGGGg -5'
10296 5' -52 NC_002687.1 + 37551 0.69 0.994207
Target:  5'- aCCAAguuuACGUagaAUUGUGUCUGCUCUUCg -3'
miRNA:   3'- -GGUU----UGCAgg-UAACGCAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 305780 0.69 0.99452
Target:  5'- uCCAAAUGUCUuugggcgaaaaacUGCGgCCGCUCCUg -3'
miRNA:   3'- -GGUUUGCAGGua-----------ACGCaGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 40296 0.68 0.995636
Target:  5'- cCCuguCGUCCAccacaGUuucaUCCGCUCCCCa -3'
miRNA:   3'- -GGuuuGCAGGUaa---CGc---AGGUGAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.