miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10296 5' -52 NC_002687.1 + 10753 0.71 0.978444
Target:  5'- aCCAcggucGCGUCCGcUGCcuucUCCAC-CCCCg -3'
miRNA:   3'- -GGUu----UGCAGGUaACGc---AGGUGaGGGG- -5'
10296 5' -52 NC_002687.1 + 11063 0.69 0.992422
Target:  5'- aCCAcacacAACGcccgCCAUgcugagaGCGUCCGCUUCCg -3'
miRNA:   3'- -GGU-----UUGCa---GGUAa------CGCAGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 22035 0.73 0.946915
Target:  5'- uCCuucAugGUCU----CGUCCGCUCCCCa -3'
miRNA:   3'- -GGu--UugCAGGuaacGCAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 25940 1.15 0.007879
Target:  5'- uCCAAACGUCCAUUGCGUCCACUCCCCa -3'
miRNA:   3'- -GGUUUGCAGGUAACGCAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 27099 0.67 0.997996
Target:  5'- gCCAGGCaGUCCGUagugauUGuUGUCCACaacaCCCUg -3'
miRNA:   3'- -GGUUUG-CAGGUA------AC-GCAGGUGa---GGGG- -5'
10296 5' -52 NC_002687.1 + 31774 0.68 0.996764
Target:  5'- gCCGAAauUCCAUUGCuGUCUACaUCCa- -3'
miRNA:   3'- -GGUUUgcAGGUAACG-CAGGUG-AGGgg -5'
10296 5' -52 NC_002687.1 + 34220 0.67 0.998307
Target:  5'- -gAAGCuUCCAUggGUGUCCuuCUCCCg -3'
miRNA:   3'- ggUUUGcAGGUAa-CGCAGGu-GAGGGg -5'
10296 5' -52 NC_002687.1 + 37551 0.69 0.994207
Target:  5'- aCCAAguuuACGUagaAUUGUGUCUGCUCUUCg -3'
miRNA:   3'- -GGUU----UGCAgg-UAACGCAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 38462 0.66 0.999546
Target:  5'- --cGGCaUuuGUUGCGcCCGCUCCCa -3'
miRNA:   3'- gguUUGcAggUAACGCaGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 39559 0.69 0.993363
Target:  5'- uUCuguCGcCCAUUugacaaucGaCGUCCGCUCCCCu -3'
miRNA:   3'- -GGuuuGCaGGUAA--------C-GCAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 40296 0.68 0.995636
Target:  5'- cCCuguCGUCCAccacaGUuucaUCCGCUCCCCa -3'
miRNA:   3'- -GGuuuGCAGGUaa---CGc---AGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 42674 0.7 0.988955
Target:  5'- -uGGACGUCCGcUGCGaCCGaccaUCCCUc -3'
miRNA:   3'- ggUUUGCAGGUaACGCaGGUg---AGGGG- -5'
10296 5' -52 NC_002687.1 + 50705 0.67 0.998576
Target:  5'- gCCAca-GUCCg--GCGcugaaagaUCCACUCCCUc -3'
miRNA:   3'- -GGUuugCAGGuaaCGC--------AGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 64044 0.66 0.999536
Target:  5'- gCCGucuAUGUCCuuacgAUUGaCGUCCGCgccuuguUCCCUg -3'
miRNA:   3'- -GGUu--UGCAGG-----UAAC-GCAGGUG-------AGGGG- -5'
10296 5' -52 NC_002687.1 + 70778 0.7 0.980576
Target:  5'- -gAGACaacacCCAUUGuCG-CCACUCCCCg -3'
miRNA:   3'- ggUUUGca---GGUAAC-GCaGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 72724 0.66 0.999546
Target:  5'- gCAGcauCGUCCGUcauaaGCGcCCACgcugaCCCCa -3'
miRNA:   3'- gGUUu--GCAGGUAa----CGCaGGUGa----GGGG- -5'
10296 5' -52 NC_002687.1 + 86044 0.67 0.998576
Target:  5'- gCCAGACGggCC--UGUGUCacccuuUUCCCCg -3'
miRNA:   3'- -GGUUUGCa-GGuaACGCAGgu----GAGGGG- -5'
10296 5' -52 NC_002687.1 + 87990 0.67 0.998576
Target:  5'- -aAGACGUCgAc-GUGUCCAgcgaacucuucCUCCCCg -3'
miRNA:   3'- ggUUUGCAGgUaaCGCAGGU-----------GAGGGG- -5'
10296 5' -52 NC_002687.1 + 88205 0.69 0.992422
Target:  5'- gCAAugGUCaCAggugucgUGCuUCUACUCUCCg -3'
miRNA:   3'- gGUUugCAG-GUa------ACGcAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 117324 0.68 0.996764
Target:  5'- -aAAACGUCC-UUGCGUaCUACgaCUCCg -3'
miRNA:   3'- ggUUUGCAGGuAACGCA-GGUGa-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.