miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10296 5' -52 NC_002687.1 + 151014 0.77 0.803035
Target:  5'- aCCAAACGUCCAUcgaccguuuuccaUGCGUacuCUCCCg -3'
miRNA:   3'- -GGUUUGCAGGUA-------------ACGCAgguGAGGGg -5'
10296 5' -52 NC_002687.1 + 153893 0.67 0.998808
Target:  5'- gCAAACGUCg---GCGUCCACaCCa- -3'
miRNA:   3'- gGUUUGCAGguaaCGCAGGUGaGGgg -5'
10296 5' -52 NC_002687.1 + 87990 0.67 0.998576
Target:  5'- -aAGACGUCgAc-GUGUCCAgcgaacucuucCUCCCCg -3'
miRNA:   3'- ggUUUGCAGgUaaCGCAGGU-----------GAGGGG- -5'
10296 5' -52 NC_002687.1 + 149104 0.67 0.998576
Target:  5'- aCCGucGCGUCCAaUG-GaaCACUCCCUg -3'
miRNA:   3'- -GGUu-UGCAGGUaACgCagGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 135243 0.68 0.99723
Target:  5'- gCCAGAUGUCCccGUUGCcaaaCCGCUgCaCCg -3'
miRNA:   3'- -GGUUUGCAGG--UAACGca--GGUGAgG-GG- -5'
10296 5' -52 NC_002687.1 + 212057 0.68 0.996764
Target:  5'- cUCAAA-GUCC--UGCGUCCGCUggucgCCCUu -3'
miRNA:   3'- -GGUUUgCAGGuaACGCAGGUGA-----GGGG- -5'
10296 5' -52 NC_002687.1 + 72724 0.66 0.999546
Target:  5'- gCAGcauCGUCCGUcauaaGCGcCCACgcugaCCCCa -3'
miRNA:   3'- gGUUu--GCAGGUAa----CGCaGGUGa----GGGG- -5'
10296 5' -52 NC_002687.1 + 154514 0.66 0.999007
Target:  5'- ---uGCGUCUucUGCGUCCuCUCCg- -3'
miRNA:   3'- gguuUGCAGGuaACGCAGGuGAGGgg -5'
10296 5' -52 NC_002687.1 + 293750 0.67 0.998576
Target:  5'- -aAGAUGaUCU-UUGCGUCCuGCUCCCg -3'
miRNA:   3'- ggUUUGC-AGGuAACGCAGG-UGAGGGg -5'
10296 5' -52 NC_002687.1 + 297972 0.68 0.99723
Target:  5'- aCAAACGcCC-UUGCGUugcggccgccaCCGCUUCCg -3'
miRNA:   3'- gGUUUGCaGGuAACGCA-----------GGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 212126 0.72 0.954831
Target:  5'- aCCAAA-GUCCAUcUGCaG-CCACUCgCCCa -3'
miRNA:   3'- -GGUUUgCAGGUA-ACG-CaGGUGAG-GGG- -5'
10296 5' -52 NC_002687.1 + 304873 0.66 0.999321
Target:  5'- gCCAGugGaCCGaacucgGgGUCCACaUUCCCg -3'
miRNA:   3'- -GGUUugCaGGUaa----CgCAGGUG-AGGGG- -5'
10296 5' -52 NC_002687.1 + 11063 0.69 0.992422
Target:  5'- aCCAcacacAACGcccgCCAUgcugagaGCGUCCGCUUCCg -3'
miRNA:   3'- -GGU-----UUGCa---GGUAa------CGCAGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 170632 0.67 0.998576
Target:  5'- uCCGAcaACGagUCGUUGuUGUCCuACUCCUCa -3'
miRNA:   3'- -GGUU--UGCa-GGUAAC-GCAGG-UGAGGGG- -5'
10296 5' -52 NC_002687.1 + 136729 0.66 0.999409
Target:  5'- --cAACaUCCAUUGCGUuggaggcguuuaccCCGCUCUCUc -3'
miRNA:   3'- gguUUGcAGGUAACGCA--------------GGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 88205 0.69 0.992422
Target:  5'- gCAAugGUCaCAggugucgUGCuUCUACUCUCCg -3'
miRNA:   3'- gGUUugCAG-GUa------ACGcAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 194128 0.66 0.998989
Target:  5'- gUCAAcgcCGUCCGccUGCGcCCGCUcguuuggCCCCg -3'
miRNA:   3'- -GGUUu--GCAGGUa-ACGCaGGUGA-------GGGG- -5'
10296 5' -52 NC_002687.1 + 225983 0.68 0.996764
Target:  5'- cUCGAcCGcCCAccggUGCGUCCuccACUCCuCCg -3'
miRNA:   3'- -GGUUuGCaGGUa---ACGCAGG---UGAGG-GG- -5'
10296 5' -52 NC_002687.1 + 117324 0.68 0.996764
Target:  5'- -aAAACGUCC-UUGCGUaCUACgaCUCCg -3'
miRNA:   3'- ggUUUGCAGGuAACGCA-GGUGa-GGGG- -5'
10296 5' -52 NC_002687.1 + 303245 0.68 0.99723
Target:  5'- gCCAAGCGcCCGca--G-CCAUUCCCCu -3'
miRNA:   3'- -GGUUUGCaGGUaacgCaGGUGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.