miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10296 5' -52 NC_002687.1 + 296776 0.69 0.994127
Target:  5'- gUCAAACGUCCGUUgaugagggucGUGUCCAUcgaggcaccggagUCCUg -3'
miRNA:   3'- -GGUUUGCAGGUAA----------CGCAGGUG-------------AGGGg -5'
10296 5' -52 NC_002687.1 + 303245 0.68 0.99723
Target:  5'- gCCAAGCGcCCGca--G-CCAUUCCCCu -3'
miRNA:   3'- -GGUUUGCaGGUaacgCaGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 117324 0.68 0.996764
Target:  5'- -aAAACGUCC-UUGCGUaCUACgaCUCCg -3'
miRNA:   3'- ggUUUGCAGGuAACGCA-GGUGa-GGGG- -5'
10296 5' -52 NC_002687.1 + 225983 0.68 0.996764
Target:  5'- cUCGAcCGcCCAccggUGCGUCCuccACUCCuCCg -3'
miRNA:   3'- -GGUUuGCaGGUa---ACGCAGG---UGAGG-GG- -5'
10296 5' -52 NC_002687.1 + 249856 0.68 0.996764
Target:  5'- gUCGAACGUCC----UGUCCGC-CCUCa -3'
miRNA:   3'- -GGUUUGCAGGuaacGCAGGUGaGGGG- -5'
10296 5' -52 NC_002687.1 + 31774 0.68 0.996764
Target:  5'- gCCGAAauUCCAUUGCuGUCUACaUCCa- -3'
miRNA:   3'- -GGUUUgcAGGUAACG-CAGGUG-AGGgg -5'
10296 5' -52 NC_002687.1 + 40296 0.68 0.995636
Target:  5'- cCCuguCGUCCAccacaGUuucaUCCGCUCCCCa -3'
miRNA:   3'- -GGuuuGCAGGUaa---CGc---AGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 305780 0.69 0.99452
Target:  5'- uCCAAAUGUCUuugggcgaaaaacUGCGgCCGCUCCUg -3'
miRNA:   3'- -GGUUUGCAGGua-----------ACGCaGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 37551 0.69 0.994207
Target:  5'- aCCAAguuuACGUagaAUUGUGUCUGCUCUUCg -3'
miRNA:   3'- -GGUU----UGCAgg-UAACGCAGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 27099 0.67 0.997996
Target:  5'- gCCAGGCaGUCCGUagugauUGuUGUCCACaacaCCCUg -3'
miRNA:   3'- -GGUUUG-CAGGUA------AC-GCAGGUGa---GGGG- -5'
10296 5' -52 NC_002687.1 + 34220 0.67 0.998307
Target:  5'- -gAAGCuUCCAUggGUGUCCuuCUCCCg -3'
miRNA:   3'- ggUUUGcAGGUAa-CGCAGGu-GAGGGg -5'
10296 5' -52 NC_002687.1 + 86044 0.67 0.998576
Target:  5'- gCCAGACGggCC--UGUGUCacccuuUUCCCCg -3'
miRNA:   3'- -GGUUUGCa-GGuaACGCAGgu----GAGGGG- -5'
10296 5' -52 NC_002687.1 + 203024 0.66 0.999546
Target:  5'- gUCAAGCGUCCAcgugacuccgUUGgGgucgCCACUCaaCa -3'
miRNA:   3'- -GGUUUGCAGGU----------AACgCa---GGUGAGggG- -5'
10296 5' -52 NC_002687.1 + 64044 0.66 0.999536
Target:  5'- gCCGucuAUGUCCuuacgAUUGaCGUCCGCgccuuguUCCCUg -3'
miRNA:   3'- -GGUu--UGCAGG-----UAAC-GCAGGUG-------AGGGG- -5'
10296 5' -52 NC_002687.1 + 311349 0.66 0.999443
Target:  5'- cUCGggUGUacaguguaUGUUGUGUCCACUUCCg -3'
miRNA:   3'- -GGUuuGCAg-------GUAACGCAGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 330545 0.66 0.999443
Target:  5'- -uGAACGcCCAguUUGCGUCCGCUg--- -3'
miRNA:   3'- ggUUUGCaGGU--AACGCAGGUGAgggg -5'
10296 5' -52 NC_002687.1 + 173834 0.66 0.999321
Target:  5'- uCCAcuuGCGccUCCAcUUGCGccUCCAgUCCCa -3'
miRNA:   3'- -GGUu--UGC--AGGU-AACGC--AGGUgAGGGg -5'
10296 5' -52 NC_002687.1 + 173882 0.66 0.999321
Target:  5'- uCCAcuuGCGccUCCAcUUGCGccUCCAgUCCCa -3'
miRNA:   3'- -GGUu--UGC--AGGU-AACGC--AGGUgAGGGg -5'
10296 5' -52 NC_002687.1 + 165046 0.67 0.998808
Target:  5'- aCGAACGUCCcc-GCGUCUccguCUaCCUCa -3'
miRNA:   3'- gGUUUGCAGGuaaCGCAGGu---GA-GGGG- -5'
10296 5' -52 NC_002687.1 + 50705 0.67 0.998576
Target:  5'- gCCAca-GUCCg--GCGcugaaagaUCCACUCCCUc -3'
miRNA:   3'- -GGUuugCAGGuaaCGC--------AGGUGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.