miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10296 5' -52 NC_002687.1 + 331156 0.69 0.993363
Target:  5'- gCCAuGCcUCCccaacugccGCGUCCGgUCCCCg -3'
miRNA:   3'- -GGUuUGcAGGuaa------CGCAGGUgAGGGG- -5'
10296 5' -52 NC_002687.1 + 330545 0.66 0.999443
Target:  5'- -uGAACGcCCAguUUGCGUCCGCUg--- -3'
miRNA:   3'- ggUUUGCaGGU--AACGCAGGUGAgggg -5'
10296 5' -52 NC_002687.1 + 311349 0.66 0.999443
Target:  5'- cUCGggUGUacaguguaUGUUGUGUCCACUUCCg -3'
miRNA:   3'- -GGUuuGCAg-------GUAACGCAGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 305780 0.69 0.99452
Target:  5'- uCCAAAUGUCUuugggcgaaaaacUGCGgCCGCUCCUg -3'
miRNA:   3'- -GGUUUGCAGGua-----------ACGCaGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 304873 0.66 0.999321
Target:  5'- gCCAGugGaCCGaacucgGgGUCCACaUUCCCg -3'
miRNA:   3'- -GGUUugCaGGUaa----CgCAGGUG-AGGGG- -5'
10296 5' -52 NC_002687.1 + 303245 0.68 0.99723
Target:  5'- gCCAAGCGcCCGca--G-CCAUUCCCCu -3'
miRNA:   3'- -GGUUUGCaGGUaacgCaGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 297972 0.68 0.99723
Target:  5'- aCAAACGcCC-UUGCGUugcggccgccaCCGCUUCCg -3'
miRNA:   3'- gGUUUGCaGGuAACGCA-----------GGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 296776 0.69 0.994127
Target:  5'- gUCAAACGUCCGUUgaugagggucGUGUCCAUcgaggcaccggagUCCUg -3'
miRNA:   3'- -GGUUUGCAGGUAA----------CGCAGGUG-------------AGGGg -5'
10296 5' -52 NC_002687.1 + 293750 0.67 0.998576
Target:  5'- -aAGAUGaUCU-UUGCGUCCuGCUCCCg -3'
miRNA:   3'- ggUUUGC-AGGuAACGCAGG-UGAGGGg -5'
10296 5' -52 NC_002687.1 + 249856 0.68 0.996764
Target:  5'- gUCGAACGUCC----UGUCCGC-CCUCa -3'
miRNA:   3'- -GGUUUGCAGGuaacGCAGGUGaGGGG- -5'
10296 5' -52 NC_002687.1 + 237246 0.7 0.98603
Target:  5'- gCuuGCGUCCuUUGCGUCCAaccggggacCUCCa- -3'
miRNA:   3'- gGuuUGCAGGuAACGCAGGU---------GAGGgg -5'
10296 5' -52 NC_002687.1 + 227085 0.78 0.731528
Target:  5'- aCCcuGCGUCCAcacGCGUCCGCgUCCaCCg -3'
miRNA:   3'- -GGuuUGCAGGUaa-CGCAGGUG-AGG-GG- -5'
10296 5' -52 NC_002687.1 + 225983 0.68 0.996764
Target:  5'- cUCGAcCGcCCAccggUGCGUCCuccACUCCuCCg -3'
miRNA:   3'- -GGUUuGCaGGUa---ACGCAGG---UGAGG-GG- -5'
10296 5' -52 NC_002687.1 + 217013 0.7 0.980576
Target:  5'- cCCuuAUcUCCGgcGUGUCCAC-CCCCa -3'
miRNA:   3'- -GGuuUGcAGGUaaCGCAGGUGaGGGG- -5'
10296 5' -52 NC_002687.1 + 212126 0.72 0.954831
Target:  5'- aCCAAA-GUCCAUcUGCaG-CCACUCgCCCa -3'
miRNA:   3'- -GGUUUgCAGGUA-ACG-CaGGUGAG-GGG- -5'
10296 5' -52 NC_002687.1 + 212057 0.68 0.996764
Target:  5'- cUCAAA-GUCC--UGCGUCCGCUggucgCCCUu -3'
miRNA:   3'- -GGUUUgCAGGuaACGCAGGUGA-----GGGG- -5'
10296 5' -52 NC_002687.1 + 203024 0.66 0.999546
Target:  5'- gUCAAGCGUCCAcgugacuccgUUGgGgucgCCACUCaaCa -3'
miRNA:   3'- -GGUUUGCAGGU----------AACgCa---GGUGAGggG- -5'
10296 5' -52 NC_002687.1 + 200901 0.69 0.990932
Target:  5'- cCCGAGCGucgacgucggcUCCAgccuucaggagcaUGCGaCCACUUCCCu -3'
miRNA:   3'- -GGUUUGC-----------AGGUa------------ACGCaGGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 194128 0.66 0.998989
Target:  5'- gUCAAcgcCGUCCGccUGCGcCCGCUcguuuggCCCCg -3'
miRNA:   3'- -GGUUu--GCAGGUa-ACGCaGGUGA-------GGGG- -5'
10296 5' -52 NC_002687.1 + 173882 0.66 0.999321
Target:  5'- uCCAcuuGCGccUCCAcUUGCGccUCCAgUCCCa -3'
miRNA:   3'- -GGUu--UGC--AGGU-AACGC--AGGUgAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.