miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10299 5' -55 NC_002687.1 + 209286 0.66 0.990445
Target:  5'- gACCAcCCgggugguuuuucuuaCACuGUGUCgCCGCGGGAUAc -3'
miRNA:   3'- -UGGUuGG---------------GUGuCAUAG-GGCGCUCUGU- -5'
10299 5' -55 NC_002687.1 + 85664 0.66 0.988669
Target:  5'- gACCGacgggACCCACGGga-CCCaCGGGACc -3'
miRNA:   3'- -UGGU-----UGGGUGUCauaGGGcGCUCUGu -5'
10299 5' -55 NC_002687.1 + 200149 0.66 0.98725
Target:  5'- uGCCAAUcgccaCCACcGUAUCCCcuCGGGACc -3'
miRNA:   3'- -UGGUUG-----GGUGuCAUAGGGc-GCUCUGu -5'
10299 5' -55 NC_002687.1 + 84277 0.66 0.984007
Target:  5'- gACUGACCCACAGaucgacuuUGUCCuCG-GGGACc -3'
miRNA:   3'- -UGGUUGGGUGUC--------AUAGG-GCgCUCUGu -5'
10299 5' -55 NC_002687.1 + 39038 0.66 0.983471
Target:  5'- -gCAGCCCGCGaaggccacgcucauGUcgCCCGCGAGcuGCu -3'
miRNA:   3'- ugGUUGGGUGU--------------CAuaGGGCGCUC--UGu -5'
10299 5' -55 NC_002687.1 + 111245 0.67 0.982168
Target:  5'- -aCGACgUCugGGUAUCCUGCGAGuuGg -3'
miRNA:   3'- ugGUUG-GGugUCAUAGGGCGCUCugU- -5'
10299 5' -55 NC_002687.1 + 85277 0.67 0.982168
Target:  5'- cGCUGGCCCACaAGgccucccugGUCCCGUGGGuCc -3'
miRNA:   3'- -UGGUUGGGUG-UCa--------UAGGGCGCUCuGu -5'
10299 5' -55 NC_002687.1 + 98006 0.67 0.978018
Target:  5'- aACC-ACCCGuCGGUGUCaCCGCc-GACAc -3'
miRNA:   3'- -UGGuUGGGU-GUCAUAG-GGCGcuCUGU- -5'
10299 5' -55 NC_002687.1 + 297593 0.67 0.973196
Target:  5'- gGCCAACCgugACA---UCCCGaCGAGGCAc -3'
miRNA:   3'- -UGGUUGGg--UGUcauAGGGC-GCUCUGU- -5'
10299 5' -55 NC_002687.1 + 184290 0.67 0.973196
Target:  5'- cGCCAGCUggaaACAGguuguuauUCuuGCGAGGCAg -3'
miRNA:   3'- -UGGUUGGg---UGUCau------AGggCGCUCUGU- -5'
10299 5' -55 NC_002687.1 + 89698 0.68 0.967651
Target:  5'- uGCCGuguCCACGGUGUCuCCGcCGAGGuCGg -3'
miRNA:   3'- -UGGUug-GGUGUCAUAG-GGC-GCUCU-GU- -5'
10299 5' -55 NC_002687.1 + 293927 0.68 0.964593
Target:  5'- -aCAAgCCAUucguGUAUUCCGCGAGAgGg -3'
miRNA:   3'- ugGUUgGGUGu---CAUAGGGCGCUCUgU- -5'
10299 5' -55 NC_002687.1 + 209678 0.68 0.961338
Target:  5'- uCCGGaucaaCAgGGUAUCCCGCGGcGACAc -3'
miRNA:   3'- uGGUUgg---GUgUCAUAGGGCGCU-CUGU- -5'
10299 5' -55 NC_002687.1 + 285203 0.69 0.950348
Target:  5'- aGCCAAUCCACccgGUCCC-CGGGAUc -3'
miRNA:   3'- -UGGUUGGGUGucaUAGGGcGCUCUGu -5'
10299 5' -55 NC_002687.1 + 308328 0.69 0.937449
Target:  5'- uUCGACCCGuguGUcUCUCGCGGGGCAa -3'
miRNA:   3'- uGGUUGGGUgu-CAuAGGGCGCUCUGU- -5'
10299 5' -55 NC_002687.1 + 154145 0.69 0.932715
Target:  5'- aGCCAGCCgAguCAGUGUUCCGCGcGuCAc -3'
miRNA:   3'- -UGGUUGGgU--GUCAUAGGGCGCuCuGU- -5'
10299 5' -55 NC_002687.1 + 201224 0.7 0.922587
Target:  5'- -gCGGCgCCACGcucUAUCCUGCGGGGCAg -3'
miRNA:   3'- ugGUUG-GGUGUc--AUAGGGCGCUCUGU- -5'
10299 5' -55 NC_002687.1 + 236809 0.7 0.905751
Target:  5'- gUCAACCCugGGaaagucaaGUCCCGUGAGAgAg -3'
miRNA:   3'- uGGUUGGGugUCa-------UAGGGCGCUCUgU- -5'
10299 5' -55 NC_002687.1 + 317023 0.7 0.899706
Target:  5'- gACC-AUCCGUGGUGUCUCGCGAGAg- -3'
miRNA:   3'- -UGGuUGGGUGUCAUAGGGCGCUCUgu -5'
10299 5' -55 NC_002687.1 + 210026 0.71 0.882997
Target:  5'- cACCAAUCUGCAuaucaucuucucguuGUGUCUCGCGGGAUc -3'
miRNA:   3'- -UGGUUGGGUGU---------------CAUAGGGCGCUCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.