miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10300 3' -58.1 NC_002687.1 + 41688 1.07 0.005684
Target:  5'- aCAUCGACACGGCUUGCGGCUCGCGCUu -3'
miRNA:   3'- -GUAGCUGUGCCGAACGCCGAGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 41742 1.07 0.005684
Target:  5'- aCAUCGACACGGCUUGCGGCUCGCGCUu -3'
miRNA:   3'- -GUAGCUGUGCCGAACGCCGAGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 41871 1.01 0.014899
Target:  5'- aCAUCGACACGGCUUGCGGCUCGgGCUu -3'
miRNA:   3'- -GUAGCUGUGCCGAACGCCGAGCgCGA- -5'
10300 3' -58.1 NC_002687.1 + 170141 0.73 0.646121
Target:  5'- --aCGACACGGUggaccugGCGGCaucguuuUCGCGCa -3'
miRNA:   3'- guaGCUGUGCCGaa-----CGCCG-------AGCGCGa -5'
10300 3' -58.1 NC_002687.1 + 215267 0.73 0.647083
Target:  5'- cCAUUGACACGGCgauaGGCUCG-GCg -3'
miRNA:   3'- -GUAGCUGUGCCGaacgCCGAGCgCGa -5'
10300 3' -58.1 NC_002687.1 + 104406 0.71 0.732367
Target:  5'- -uUCGACACGGCgugGagaaagGGUUUGCGCUu -3'
miRNA:   3'- guAGCUGUGCCGaa-Cg-----CCGAGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 297327 0.71 0.74156
Target:  5'- uGUCGGCggACuGCUUGCGGaaCUCGCGUg -3'
miRNA:   3'- gUAGCUG--UGcCGAACGCC--GAGCGCGa -5'
10300 3' -58.1 NC_002687.1 + 316069 0.71 0.759684
Target:  5'- -cUCGugGCGGCaggauucggUGCGGCUgGCGgUg -3'
miRNA:   3'- guAGCugUGCCGa--------ACGCCGAgCGCgA- -5'
10300 3' -58.1 NC_002687.1 + 165935 0.7 0.777408
Target:  5'- uGUCGACGCGGCaaacGCGGCg-GCGg- -3'
miRNA:   3'- gUAGCUGUGCCGaa--CGCCGagCGCga -5'
10300 3' -58.1 NC_002687.1 + 141597 0.7 0.786102
Target:  5'- aCGUCGACGCGGCcgugcuccGCGGCaCGCuCUa -3'
miRNA:   3'- -GUAGCUGUGCCGaa------CGCCGaGCGcGA- -5'
10300 3' -58.1 NC_002687.1 + 42376 0.7 0.794673
Target:  5'- aCAUCGAaaUAUgGGCUgugGUGGCUCGCGg- -3'
miRNA:   3'- -GUAGCU--GUG-CCGAa--CGCCGAGCGCga -5'
10300 3' -58.1 NC_002687.1 + 212381 0.69 0.835439
Target:  5'- gGUCGACGUGGCgagggggGCGGCcuuguUCGCGUc -3'
miRNA:   3'- gUAGCUGUGCCGaa-----CGCCG-----AGCGCGa -5'
10300 3' -58.1 NC_002687.1 + 263167 0.69 0.843128
Target:  5'- aAUCGAacgaGCGGCgucguccGCGGCUUGUGUc -3'
miRNA:   3'- gUAGCUg---UGCCGaa-----CGCCGAGCGCGa -5'
10300 3' -58.1 NC_002687.1 + 128149 0.69 0.843128
Target:  5'- cCAUUGACACGGCgaccgaauauugUUGUGGgUCGCuCUc -3'
miRNA:   3'- -GUAGCUGUGCCG------------AACGCCgAGCGcGA- -5'
10300 3' -58.1 NC_002687.1 + 180144 0.69 0.846156
Target:  5'- gGUCGACAgcggagcggguuuccCGGacaGUGGCUCGCGUg -3'
miRNA:   3'- gUAGCUGU---------------GCCgaaCGCCGAGCGCGa -5'
10300 3' -58.1 NC_002687.1 + 125502 0.68 0.865153
Target:  5'- uCAUCGACACGGaCUccGcCGGCUCuuGCc -3'
miRNA:   3'- -GUAGCUGUGCC-GAa-C-GCCGAGcgCGa -5'
10300 3' -58.1 NC_002687.1 + 292745 0.68 0.878917
Target:  5'- aUAUCGGCcccauuuuugACGGCUguUGCGuGCgauacgcaUCGCGCUg -3'
miRNA:   3'- -GUAGCUG----------UGCCGA--ACGC-CG--------AGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 96121 0.68 0.885509
Target:  5'- --gCGACAUGGCgguucGCGGCcccCGUGCg -3'
miRNA:   3'- guaGCUGUGCCGaa---CGCCGa--GCGCGa -5'
10300 3' -58.1 NC_002687.1 + 169818 0.68 0.891903
Target:  5'- aCGUCGACACGGCUcaUGaaugGGUgcaCGgGCa -3'
miRNA:   3'- -GUAGCUGUGCCGA--ACg---CCGa--GCgCGa -5'
10300 3' -58.1 NC_002687.1 + 200946 0.68 0.891903
Target:  5'- -cUUGGCACaguGGCUcaUGCGcGCUCGgGCg -3'
miRNA:   3'- guAGCUGUG---CCGA--ACGC-CGAGCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.