miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10300 3' -58.1 NC_002687.1 + 12260 0.67 0.925948
Target:  5'- gGUCGcgaaACugGGCgugacGCGGCU-GCGCa -3'
miRNA:   3'- gUAGC----UGugCCGaa---CGCCGAgCGCGa -5'
10300 3' -58.1 NC_002687.1 + 23967 0.66 0.948936
Target:  5'- uGUCGugGCGGCgugguggUGUGGCagcagugacgcagaGCGCa -3'
miRNA:   3'- gUAGCugUGCCGa------ACGCCGag------------CGCGa -5'
10300 3' -58.1 NC_002687.1 + 41688 1.07 0.005684
Target:  5'- aCAUCGACACGGCUUGCGGCUCGCGCUu -3'
miRNA:   3'- -GUAGCUGUGCCGAACGCCGAGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 41742 1.07 0.005684
Target:  5'- aCAUCGACACGGCUUGCGGCUCGCGCUu -3'
miRNA:   3'- -GUAGCUGUGCCGAACGCCGAGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 41871 1.01 0.014899
Target:  5'- aCAUCGACACGGCUUGCGGCUCGgGCUu -3'
miRNA:   3'- -GUAGCUGUGCCGAACGCCGAGCgCGA- -5'
10300 3' -58.1 NC_002687.1 + 42376 0.7 0.794673
Target:  5'- aCAUCGAaaUAUgGGCUgugGUGGCUCGCGg- -3'
miRNA:   3'- -GUAGCU--GUG-CCGAa--CGCCGAGCGCga -5'
10300 3' -58.1 NC_002687.1 + 96121 0.68 0.885509
Target:  5'- --gCGACAUGGCgguucGCGGCcccCGUGCg -3'
miRNA:   3'- guaGCUGUGCCGaa---CGCCGa--GCGCGa -5'
10300 3' -58.1 NC_002687.1 + 104406 0.71 0.732367
Target:  5'- -uUCGACACGGCgugGagaaagGGUUUGCGCUu -3'
miRNA:   3'- guAGCUGUGCCGaa-Cg-----CCGAGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 125502 0.68 0.865153
Target:  5'- uCAUCGACACGGaCUccGcCGGCUCuuGCc -3'
miRNA:   3'- -GUAGCUGUGCC-GAa-C-GCCGAGcgCGa -5'
10300 3' -58.1 NC_002687.1 + 128149 0.69 0.843128
Target:  5'- cCAUUGACACGGCgaccgaauauugUUGUGGgUCGCuCUc -3'
miRNA:   3'- -GUAGCUGUGCCG------------AACGCCgAGCGcGA- -5'
10300 3' -58.1 NC_002687.1 + 135619 0.67 0.920798
Target:  5'- aCcgCGACGCGGUgcaGCGGUUUG-GCa -3'
miRNA:   3'- -GuaGCUGUGCCGaa-CGCCGAGCgCGa -5'
10300 3' -58.1 NC_002687.1 + 141597 0.7 0.786102
Target:  5'- aCGUCGACGCGGCcgugcuccGCGGCaCGCuCUa -3'
miRNA:   3'- -GUAGCUGUGCCGaa------CGCCGaGCGcGA- -5'
10300 3' -58.1 NC_002687.1 + 165935 0.7 0.777408
Target:  5'- uGUCGACGCGGCaaacGCGGCg-GCGg- -3'
miRNA:   3'- gUAGCUGUGCCGaa--CGCCGagCGCga -5'
10300 3' -58.1 NC_002687.1 + 169818 0.68 0.891903
Target:  5'- aCGUCGACACGGCUcaUGaaugGGUgcaCGgGCa -3'
miRNA:   3'- -GUAGCUGUGCCGA--ACg---CCGa--GCgCGa -5'
10300 3' -58.1 NC_002687.1 + 170141 0.73 0.646121
Target:  5'- --aCGACACGGUggaccugGCGGCaucguuuUCGCGCa -3'
miRNA:   3'- guaGCUGUGCCGaa-----CGCCG-------AGCGCGa -5'
10300 3' -58.1 NC_002687.1 + 180144 0.69 0.846156
Target:  5'- gGUCGACAgcggagcggguuuccCGGacaGUGGCUCGCGUg -3'
miRNA:   3'- gUAGCUGU---------------GCCgaaCGCCGAGCGCGa -5'
10300 3' -58.1 NC_002687.1 + 180784 0.66 0.948537
Target:  5'- gCAUCGGCGaagaagaucuGCUUGCGuacaacgagguuGCUCGUGCUg -3'
miRNA:   3'- -GUAGCUGUgc--------CGAACGC------------CGAGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 200098 0.66 0.944017
Target:  5'- gGUCGACAugcucguuggugcCGGCgacGaCGGC-CGCGCg -3'
miRNA:   3'- gUAGCUGU-------------GCCGaa-C-GCCGaGCGCGa -5'
10300 3' -58.1 NC_002687.1 + 200946 0.68 0.891903
Target:  5'- -cUUGGCACaguGGCUcaUGCGcGCUCGgGCg -3'
miRNA:   3'- guAGCUGUG---CCGA--ACGC-CGAGCgCGa -5'
10300 3' -58.1 NC_002687.1 + 208454 0.67 0.920798
Target:  5'- gGUCGACGUGGUgccuucGCGGgucguuCUCGCGCUu -3'
miRNA:   3'- gUAGCUGUGCCGaa----CGCC------GAGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.