miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10300 5' -52 NC_002687.1 + 111500 0.68 0.99275
Target:  5'- aGCAACCCUUCgGUcaaguacggaugaACGCCAcgcACAggCGAc -3'
miRNA:   3'- -UGUUGGGAAGgCG-------------UGUGGU---UGUa-GCU- -5'
10300 5' -52 NC_002687.1 + 114613 0.67 0.996519
Target:  5'- -uGAUCCUUuuGCGaaaGCCGACGUCc- -3'
miRNA:   3'- ugUUGGGAAggCGUg--UGGUUGUAGcu -5'
10300 5' -52 NC_002687.1 + 119753 0.66 0.999122
Target:  5'- gACAACUCUUCUGC-CGgCGACGUa-- -3'
miRNA:   3'- -UGUUGGGAAGGCGuGUgGUUGUAgcu -5'
10300 5' -52 NC_002687.1 + 125435 0.69 0.989463
Target:  5'- aACGgcGCCCUUUgUGgGCACCAggcGCAUCGAc -3'
miRNA:   3'- -UGU--UGGGAAG-GCgUGUGGU---UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 131588 0.66 0.998475
Target:  5'- aACAugUCgaaUCCGUGCGCCGAU-UCGGg -3'
miRNA:   3'- -UGUugGGa--AGGCGUGUGGUUGuAGCU- -5'
10300 5' -52 NC_002687.1 + 135614 0.7 0.982383
Target:  5'- gACAACCCgaacuucUUCuCGauguuguuggaaauCACACCAACGUCGGc -3'
miRNA:   3'- -UGUUGGG-------AAG-GC--------------GUGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 143333 0.7 0.971108
Target:  5'- cACAGCCCUccUCgGCACACacucucuuguCAUCGGa -3'
miRNA:   3'- -UGUUGGGA--AGgCGUGUGguu-------GUAGCU- -5'
10300 5' -52 NC_002687.1 + 154191 0.68 0.992251
Target:  5'- cCAACgCUUCCGU-CGCCAaucuugguggaggagACGUCGAg -3'
miRNA:   3'- uGUUGgGAAGGCGuGUGGU---------------UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 157961 0.66 0.999122
Target:  5'- uGCGAUCUaUCCGacgAUGCCAAuCAUCGAa -3'
miRNA:   3'- -UGUUGGGaAGGCg--UGUGGUU-GUAGCU- -5'
10300 5' -52 NC_002687.1 + 163964 0.66 0.999122
Target:  5'- gACGACUCUgucucguacUCCGUGuCGCCAucuuCGUCGGu -3'
miRNA:   3'- -UGUUGGGA---------AGGCGU-GUGGUu---GUAGCU- -5'
10300 5' -52 NC_002687.1 + 169798 0.67 0.997464
Target:  5'- cCGugUCguggCCG-ACGCCGACGUCGAc -3'
miRNA:   3'- uGUugGGaa--GGCgUGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 169874 0.66 0.998475
Target:  5'- -uGACCCcUUCGCcCGCaGGCGUCGAa -3'
miRNA:   3'- ugUUGGGaAGGCGuGUGgUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 180331 0.68 0.991507
Target:  5'- --cACUCguagCCGCGCGCCAACAaagagggaauaacgUCGAu -3'
miRNA:   3'- uguUGGGaa--GGCGUGUGGUUGU--------------AGCU- -5'
10300 5' -52 NC_002687.1 + 182468 0.66 0.998475
Target:  5'- aACGACUUggCCGCuuuCGCCAGCugcgcuUCGGg -3'
miRNA:   3'- -UGUUGGGaaGGCGu--GUGGUUGu-----AGCU- -5'
10300 5' -52 NC_002687.1 + 196472 0.68 0.995302
Target:  5'- uCAGCCCUUCCGgaGC-CCGACAg--- -3'
miRNA:   3'- uGUUGGGAAGGCg-UGuGGUUGUagcu -5'
10300 5' -52 NC_002687.1 + 197232 0.73 0.918035
Target:  5'- --cACCUUUCUGUACACUucggAGCAUCGAa -3'
miRNA:   3'- uguUGGGAAGGCGUGUGG----UUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 201515 0.75 0.835423
Target:  5'- aACAACCCuUUCCcCGCACCGGggauCGUCGAg -3'
miRNA:   3'- -UGUUGGG-AAGGcGUGUGGUU----GUAGCU- -5'
10300 5' -52 NC_002687.1 + 204168 0.66 0.998939
Target:  5'- -gGGCCCUcgggUCGCAUAUCAGCG-CGGg -3'
miRNA:   3'- ugUUGGGAa---GGCGUGUGGUUGUaGCU- -5'
10300 5' -52 NC_002687.1 + 205135 0.7 0.976784
Target:  5'- uCAACaCUUCCGCGCACCGucgcgccguACAccUCGGa -3'
miRNA:   3'- uGUUGgGAAGGCGUGUGGU---------UGU--AGCU- -5'
10300 5' -52 NC_002687.1 + 205226 0.68 0.993759
Target:  5'- cCGugCCUUCCGCAaaauCGCCuuccACGUCa- -3'
miRNA:   3'- uGUugGGAAGGCGU----GUGGu---UGUAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.