miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10300 5' -52 NC_002687.1 + 2781 0.69 0.989331
Target:  5'- cACAggGCCgUaccaUCCGUgucuaugACACCGGCGUCGAg -3'
miRNA:   3'- -UGU--UGGgA----AGGCG-------UGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 4799 0.67 0.996519
Target:  5'- gGCu-CCCUgugcCCGCACugCGcgugcaccggaGCGUCGAu -3'
miRNA:   3'- -UGuuGGGAa---GGCGUGugGU-----------UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 7555 0.67 0.997464
Target:  5'- ----gCCUUCCGC-CACCGuCGUCGu -3'
miRNA:   3'- uguugGGAAGGCGuGUGGUuGUAGCu -5'
10300 5' -52 NC_002687.1 + 20637 0.68 0.995302
Target:  5'- uCAGCCCUUCCGgaGC-CCGACAg--- -3'
miRNA:   3'- uGUUGGGAAGGCg-UGuGGUUGUagcu -5'
10300 5' -52 NC_002687.1 + 21005 0.68 0.992847
Target:  5'- aGCAAgCCUUCCGUcaGCCGACuUCa- -3'
miRNA:   3'- -UGUUgGGAAGGCGugUGGUUGuAGcu -5'
10300 5' -52 NC_002687.1 + 25071 0.68 0.992847
Target:  5'- uUAACCCUUCCGacgGCGgguCCuuCGUCGAu -3'
miRNA:   3'- uGUUGGGAAGGCg--UGU---GGuuGUAGCU- -5'
10300 5' -52 NC_002687.1 + 35131 0.69 0.986588
Target:  5'- cGCGGCCaagcUCgGCuACACCGugAUCGAc -3'
miRNA:   3'- -UGUUGGga--AGgCG-UGUGGUugUAGCU- -5'
10300 5' -52 NC_002687.1 + 39064 0.69 0.986588
Target:  5'- --cGCCCgcgagCUGCugaagcaugGCGCCGACAUCGAc -3'
miRNA:   3'- uguUGGGaa---GGCG---------UGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 40923 0.73 0.918035
Target:  5'- --cACCUUUCUGUACACUucggAGCAUCGAa -3'
miRNA:   3'- uguUGGGAAGGCGUGUGG----UUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 40946 0.7 0.979074
Target:  5'- cGCGGCCCgcaauucgUCCG-ACGCCGcucuggcgaaaGCGUCGAg -3'
miRNA:   3'- -UGUUGGGa-------AGGCgUGUGGU-----------UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 41708 1.09 0.015698
Target:  5'- cACAACCCUUCCGCACACCAACAUCGAc -3'
miRNA:   3'- -UGUUGGGAAGGCGUGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 41775 0.9 0.188093
Target:  5'- uCAGCCCUUCCauggacggcgugcgGCACACCAACAUCGAc -3'
miRNA:   3'- uGUUGGGAAGG--------------CGUGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 41903 0.8 0.627935
Target:  5'- -uGGCCCUUCCauggauggcgugcGCaACACCAACAUCGAc -3'
miRNA:   3'- ugUUGGGAAGG-------------CG-UGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 46234 0.67 0.99785
Target:  5'- aACGACCCaggccugUCuCGUACcuGCCGACGUCu- -3'
miRNA:   3'- -UGUUGGGa------AG-GCGUG--UGGUUGUAGcu -5'
10300 5' -52 NC_002687.1 + 67162 0.7 0.974316
Target:  5'- aGCAGCCgUUgCGCugACCGAC-UUGGa -3'
miRNA:   3'- -UGUUGGgAAgGCGugUGGUUGuAGCU- -5'
10300 5' -52 NC_002687.1 + 72709 0.69 0.984941
Target:  5'- gACGACCC--CCGCuCGgCAGCAUCGu -3'
miRNA:   3'- -UGUUGGGaaGGCGuGUgGUUGUAGCu -5'
10300 5' -52 NC_002687.1 + 74962 0.7 0.974316
Target:  5'- cCGAUCUUUCCaGUAUACC-ACGUCGAc -3'
miRNA:   3'- uGUUGGGAAGG-CGUGUGGuUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 76352 0.66 0.998939
Target:  5'- gACGAUgCUUCCaCAC-CCAGCAcgUCGGu -3'
miRNA:   3'- -UGUUGgGAAGGcGUGuGGUUGU--AGCU- -5'
10300 5' -52 NC_002687.1 + 87173 0.68 0.994574
Target:  5'- uGCAGCCCgguaacccCCGC-CA-CAACGUCGGg -3'
miRNA:   3'- -UGUUGGGaa------GGCGuGUgGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 107426 0.7 0.983145
Target:  5'- cACAcCUCUUCCGgACAC--GCAUCGAu -3'
miRNA:   3'- -UGUuGGGAAGGCgUGUGguUGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.