miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10300 5' -52 NC_002687.1 + 41708 1.09 0.015698
Target:  5'- cACAACCCUUCCGCACACCAACAUCGAc -3'
miRNA:   3'- -UGUUGGGAAGGCGUGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 41775 0.9 0.188093
Target:  5'- uCAGCCCUUCCauggacggcgugcgGCACACCAACAUCGAc -3'
miRNA:   3'- uGUUGGGAAGG--------------CGUGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 41903 0.8 0.627935
Target:  5'- -uGGCCCUUCCauggauggcgugcGCaACACCAACAUCGAc -3'
miRNA:   3'- ugUUGGGAAGG-------------CG-UGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 201515 0.75 0.835423
Target:  5'- aACAACCCuUUCCcCGCACCGGggauCGUCGAg -3'
miRNA:   3'- -UGUUGGG-AAGGcGUGUGGUU----GUAGCU- -5'
10300 5' -52 NC_002687.1 + 268938 0.73 0.906418
Target:  5'- aGCGugucACCUUUCUGUACACUucggAGCAUCGAa -3'
miRNA:   3'- -UGU----UGGGAAGGCGUGUGG----UUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 222823 0.73 0.918035
Target:  5'- --cACCUUUCUGUACACUucggAGCAUCGAa -3'
miRNA:   3'- uguUGGGAAGGCGUGUGG----UUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 197232 0.73 0.918035
Target:  5'- --cACCUUUCUGUACACUucggAGCAUCGAa -3'
miRNA:   3'- uguUGGGAAGGCGUGUGG----UUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 40923 0.73 0.918035
Target:  5'- --cACCUUUCUGUACACUucggAGCAUCGAa -3'
miRNA:   3'- uguUGGGAAGGCGUGUGG----UUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 211967 0.71 0.954643
Target:  5'- cACAGCCCUggggaacgggaaCCGCuccauCGCCAACGUCu- -3'
miRNA:   3'- -UGUUGGGAa-----------GGCGu----GUGGUUGUAGcu -5'
10300 5' -52 NC_002687.1 + 143333 0.7 0.971108
Target:  5'- cACAGCCCUccUCgGCACACacucucuuguCAUCGGa -3'
miRNA:   3'- -UGUUGGGA--AGgCGUGUGguu-------GUAGCU- -5'
10300 5' -52 NC_002687.1 + 74962 0.7 0.974316
Target:  5'- cCGAUCUUUCCaGUAUACC-ACGUCGAc -3'
miRNA:   3'- uGUUGGGAAGG-CGUGUGGuUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 67162 0.7 0.974316
Target:  5'- aGCAGCCgUUgCGCugACCGAC-UUGGa -3'
miRNA:   3'- -UGUUGGgAAgGCGugUGGUUGuAGCU- -5'
10300 5' -52 NC_002687.1 + 205135 0.7 0.976784
Target:  5'- uCAACaCUUCCGCGCACCGucgcgccguACAccUCGGa -3'
miRNA:   3'- uGUUGgGAAGGCGUGUGGU---------UGU--AGCU- -5'
10300 5' -52 NC_002687.1 + 40946 0.7 0.979074
Target:  5'- cGCGGCCCgcaauucgUCCG-ACGCCGcucuggcgaaaGCGUCGAg -3'
miRNA:   3'- -UGUUGGGa-------AGGCgUGUGGU-----------UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 218723 0.7 0.981192
Target:  5'- cCGACCCUUCUcucguuugGUACACCGuacagcaguagGCAUUGAa -3'
miRNA:   3'- uGUUGGGAAGG--------CGUGUGGU-----------UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 135614 0.7 0.982383
Target:  5'- gACAACCCgaacuucUUCuCGauguuguuggaaauCACACCAACGUCGGc -3'
miRNA:   3'- -UGUUGGG-------AAG-GC--------------GUGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 107426 0.7 0.983145
Target:  5'- cACAcCUCUUCCGgACAC--GCAUCGAu -3'
miRNA:   3'- -UGUuGGGAAGGCgUGUGguUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 72709 0.69 0.984941
Target:  5'- gACGACCC--CCGCuCGgCAGCAUCGu -3'
miRNA:   3'- -UGUUGGGaaGGCGuGUgGUUGUAGCu -5'
10300 5' -52 NC_002687.1 + 312845 0.69 0.98643
Target:  5'- cGCAACCaa-CCGCaugauguACGCCAcuACGUCGAc -3'
miRNA:   3'- -UGUUGGgaaGGCG-------UGUGGU--UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 35131 0.69 0.986588
Target:  5'- cGCGGCCaagcUCgGCuACACCGugAUCGAc -3'
miRNA:   3'- -UGUUGGga--AGgCG-UGUGGUugUAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.