miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10303 3' -46 NC_002687.1 + 50030 0.68 0.999995
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCu -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGu -5'
10303 3' -46 NC_002687.1 + 50371 0.66 1
Target:  5'- cAACGUAAUACGAUUUAUCGc------ -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCacgacgu -5'
10303 3' -46 NC_002687.1 + 51257 0.66 1
Target:  5'- cAACGUAAUACGAUUUAUCGc------ -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCacgacgu -5'
10303 3' -46 NC_002687.1 + 51322 1.04 0.101413
Target:  5'- cAACGUAAUACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 51386 0.68 0.999995
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCu -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGu -5'
10303 3' -46 NC_002687.1 + 51387 1.04 0.101413
Target:  5'- cAACGUAAUACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 51452 1.04 0.101413
Target:  5'- cAACGUAAUACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 51533 1.04 0.101413
Target:  5'- cAACGUAAUACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 51598 1.04 0.101413
Target:  5'- cAACGUAAUACGAUUUAUCGUGCUGCAg -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 51662 0.93 0.338384
Target:  5'- cAACGUAGCACGAUUUAUCGUGCUuCAg -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGAcGU- -5'
10303 3' -46 NC_002687.1 + 51727 1.04 0.101413
Target:  5'- cAACGUAAUACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 51971 0.69 0.999957
Target:  5'- -uUGUcGCACGAUaUAUCGUGUuacguUGCAg -3'
miRNA:   3'- uuGCAuUGUGCUAaAUAGCACG-----ACGU- -5'
10303 3' -46 NC_002687.1 + 52203 0.71 0.99973
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCAc -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGU- -5'
10303 3' -46 NC_002687.1 + 52268 0.71 0.99973
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCAc -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGU- -5'
10303 3' -46 NC_002687.1 + 52333 0.81 0.86579
Target:  5'- cAACGUAACACGAUaUAUCGUGCg--- -3'
miRNA:   3'- -UUGCAUUGUGCUAaAUAGCACGacgu -5'
10303 3' -46 NC_002687.1 + 52349 0.71 0.99973
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCAc -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGU- -5'
10303 3' -46 NC_002687.1 + 52398 1.04 0.101413
Target:  5'- cAACGUAAUACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 52457 0.71 0.99973
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCAc -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGU- -5'
10303 3' -46 NC_002687.1 + 52479 1.04 0.101413
Target:  5'- cAACGUAAUACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 52544 1.04 0.101413
Target:  5'- cAACGUAAUACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.