miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10303 3' -46 NC_002687.1 + 227793 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 228804 0.93 0.338384
Target:  5'- cAACGUAACACGAUUUAUCGUGCUuCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGAcGU- -5'
10303 3' -46 NC_002687.1 + 228028 0.92 0.396596
Target:  5'- cAACGUAACACGAUUUGUCGUGCUuCGg -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGAcGU- -5'
10303 3' -46 NC_002687.1 + 180806 0.66 1
Target:  5'- uGCGUAcaACGAggUUGcUCGUGCUGaCAa -3'
miRNA:   3'- uUGCAUugUGCUa-AAU-AGCACGAC-GU- -5'
10303 3' -46 NC_002687.1 + 228610 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 228675 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 228998 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 229063 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 227963 1.04 0.101413
Target:  5'- cAACGUAAUACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 228740 0.93 0.338384
Target:  5'- cAACGUAACACGAUUUAUCGUGCUuCAg -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGAcGU- -5'
10303 3' -46 NC_002687.1 + 228482 1.03 0.104212
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGUAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 229258 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUGUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 228092 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 228223 0.98 0.207386
Target:  5'- cAACGgAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCaUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 228288 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 229193 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 228418 0.93 0.338384
Target:  5'- cAACGUAACACGAUUUAUCGUGCUuCAg -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGAcGU- -5'
10303 3' -46 NC_002687.1 + 229128 0.93 0.338384
Target:  5'- cAACGUAACACGAUUUAUCGUGCUuCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGAcGU- -5'
10303 3' -46 NC_002687.1 + 228353 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 228869 1.08 0.060044
Target:  5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.