miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10303 5' -50.5 NC_002687.1 + 50234 0.7 0.989294
Target:  5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3'
miRNA:   3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5'
10303 5' -50.5 NC_002687.1 + 50393 1 0.055729
Target:  5'- --aGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- acaCGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 51121 0.7 0.989294
Target:  5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3'
miRNA:   3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5'
10303 5' -50.5 NC_002687.1 + 51282 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 51347 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 51412 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 51479 1 0.058845
Target:  5'- gUGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 51558 1.05 0.029654
Target:  5'- gUGUGCAGUUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 51624 0.99 0.069236
Target:  5'- gGUGCauAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 51687 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 51749 1 0.055729
Target:  5'- --aGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- acaCGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 52106 0.7 0.989294
Target:  5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3'
miRNA:   3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5'
10303 5' -50.5 NC_002687.1 + 52358 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 52425 1 0.058845
Target:  5'- gUGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 52504 1.02 0.042405
Target:  5'- gUGUGCAGCUCACUuAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAuUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 52569 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 52634 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 52715 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 52758 0.66 0.999559
Target:  5'- gUGUGUAGCUCACUAAGgggacaaaaggUGUGggGaCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUa----------GCACgaC-GU- -5'
10303 5' -50.5 NC_002687.1 + 52823 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.