Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10303 | 5' | -50.5 | NC_002687.1 | + | 228067 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228327 | 0.99 | 0.069236 |
Target: 5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228972 | 0.99 | 0.069236 |
Target: 5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 129142 | 0.66 | 0.999454 |
Target: 5'- gGUGUGGCUCACgu-AUCcuUGCUGgAu -3' miRNA: 3'- aCACGUCGAGUGauuUAGc-ACGACgU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 227873 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 227938 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228132 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228650 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228844 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229233 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229038 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228779 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228263 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229103 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228585 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228715 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229168 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228456 | 0.99 | 0.069236 |
Target: 5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 227833 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228003 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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