miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10311 3' -50.8 NC_002687.1 + 182745 0.66 0.999572
Target:  5'- -cGCCAugugugUCGCGACAUcGa--UCGCCGa -3'
miRNA:   3'- aaUGGU------AGCGCUGUAaCaacAGCGGC- -5'
10311 3' -50.8 NC_002687.1 + 116722 0.66 0.999572
Target:  5'- -cACCGaCaCGugGUUGUUGUUGUCGu -3'
miRNA:   3'- aaUGGUaGcGCugUAACAACAGCGGC- -5'
10311 3' -50.8 NC_002687.1 + 111773 0.66 0.999472
Target:  5'- cUACuCAUCGUaucGAUAUUcGUUGUCGgCGg -3'
miRNA:   3'- aAUG-GUAGCG---CUGUAA-CAACAGCgGC- -5'
10311 3' -50.8 NC_002687.1 + 296991 0.66 0.999351
Target:  5'- -cACCAUCGCGcGCGUccucgguggcgaUGUcucgcUGUgCGCCGa -3'
miRNA:   3'- aaUGGUAGCGC-UGUA------------ACA-----ACA-GCGGC- -5'
10311 3' -50.8 NC_002687.1 + 203016 0.67 0.999038
Target:  5'- --uCCA-CGUGACuccGUUGggGUCGCCa -3'
miRNA:   3'- aauGGUaGCGCUG---UAACaaCAGCGGc -5'
10311 3' -50.8 NC_002687.1 + 170257 0.67 0.999038
Target:  5'- -gACCGUUGUugcuGACAUUGUugcugacauUGUUGCUGa -3'
miRNA:   3'- aaUGGUAGCG----CUGUAACA---------ACAGCGGC- -5'
10311 3' -50.8 NC_002687.1 + 97657 0.67 0.999038
Target:  5'- -cACCGaCGgGugGUUGUUGUUGuuGc -3'
miRNA:   3'- aaUGGUaGCgCugUAACAACAGCggC- -5'
10311 3' -50.8 NC_002687.1 + 269534 0.67 0.998839
Target:  5'- gUGCCAagGCGugGcUGUucgacccgUGUUGCCGu -3'
miRNA:   3'- aAUGGUagCGCugUaACA--------ACAGCGGC- -5'
10311 3' -50.8 NC_002687.1 + 115171 0.67 0.998579
Target:  5'- gUACCuucaacUCGCGGCuaUGUUGuggagcaUCGCCGa -3'
miRNA:   3'- aAUGGu-----AGCGCUGuaACAAC-------AGCGGC- -5'
10311 3' -50.8 NC_002687.1 + 90030 0.68 0.998014
Target:  5'- -cAUgAUCGCGGCcuccGUUGUCGCgGg -3'
miRNA:   3'- aaUGgUAGCGCUGuaa-CAACAGCGgC- -5'
10311 3' -50.8 NC_002687.1 + 102929 0.68 0.997648
Target:  5'- gUUGCUGUUGCuGCuGUUGUUGUUGCUGc -3'
miRNA:   3'- -AAUGGUAGCGcUG-UAACAACAGCGGC- -5'
10311 3' -50.8 NC_002687.1 + 102890 0.68 0.997648
Target:  5'- gUUGCUGUUGCuGCuGUUGUUGUUGCUGc -3'
miRNA:   3'- -AAUGGUAGCGcUG-UAACAACAGCGGC- -5'
10311 3' -50.8 NC_002687.1 + 103135 0.68 0.997648
Target:  5'- -cGCCGUCGCuGuCGcUGUcgccgucgcUGUCGCCGu -3'
miRNA:   3'- aaUGGUAGCG-CuGUaACA---------ACAGCGGC- -5'
10311 3' -50.8 NC_002687.1 + 215359 0.68 0.997648
Target:  5'- --gUCAUCGUGACGa---UGUCGCCGc -3'
miRNA:   3'- aauGGUAGCGCUGUaacaACAGCGGC- -5'
10311 3' -50.8 NC_002687.1 + 195926 0.68 0.997228
Target:  5'- gUugCAcgCGuCGACGUUGccGUCGCCa -3'
miRNA:   3'- aAugGUa-GC-GCUGUAACaaCAGCGGc -5'
10311 3' -50.8 NC_002687.1 + 20091 0.68 0.997228
Target:  5'- gUugCAcgCGuCGACGUUGccGUCGCCa -3'
miRNA:   3'- aAugGUa-GC-GCUGUAACaaCAGCGGc -5'
10311 3' -50.8 NC_002687.1 + 221518 0.68 0.997228
Target:  5'- gUugCAcgCGuCGACGUUGccGUCGCCa -3'
miRNA:   3'- aAugGUa-GC-GCUGUAACaaCAGCGGc -5'
10311 3' -50.8 NC_002687.1 + 179543 0.68 0.997228
Target:  5'- aUUGCuUAUCGCGGCGUUGU--UCGCa- -3'
miRNA:   3'- -AAUG-GUAGCGCUGUAACAacAGCGgc -5'
10311 3' -50.8 NC_002687.1 + 159177 0.69 0.995576
Target:  5'- -gACCGgcgGCGACGgcgguccgucGUUGUCGCCGc -3'
miRNA:   3'- aaUGGUag-CGCUGUaa--------CAACAGCGGC- -5'
10311 3' -50.8 NC_002687.1 + 183367 0.69 0.995576
Target:  5'- cUGCUGUCGCGGCuAUUGUaacucuucUGUC-CCGa -3'
miRNA:   3'- aAUGGUAGCGCUG-UAACA--------ACAGcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.