miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10312 5' -54.3 NC_002687.1 + 90089 0.72 0.885107
Target:  5'- aGga-GAGGAGGUuucuACGACGACACCg -3'
miRNA:   3'- gCaggCUCCUUCGuc--UGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 97587 0.66 0.994205
Target:  5'- aCGcCCaGGGGAAucgguGCuGGgGAUGACGCCg -3'
miRNA:   3'- -GCaGG-CUCCUU-----CGuCUgCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 103095 0.67 0.991436
Target:  5'- aCG-CCG-GGAAcaacGCGGGugcCGACGACAUCa -3'
miRNA:   3'- -GCaGGCuCCUU----CGUCU---GCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 103537 0.69 0.968965
Target:  5'- -cUCCGGGaGAcagAGCGGGCGACGGgAUg -3'
miRNA:   3'- gcAGGCUC-CU---UCGUCUGCUGCUgUGg -5'
10312 5' -54.3 NC_002687.1 + 104707 0.66 0.994512
Target:  5'- -cUUCGAGGGaccAGCcgaAGACGACGAguacguggguggccaCGCCg -3'
miRNA:   3'- gcAGGCUCCU---UCG---UCUGCUGCU---------------GUGG- -5'
10312 5' -54.3 NC_002687.1 + 104786 0.66 0.994205
Target:  5'- gGagUGAGGAGGgAuucGAUGGCGACACa -3'
miRNA:   3'- gCagGCUCCUUCgU---CUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 105423 0.68 0.985916
Target:  5'- uCGuUCCaGGGGAugagcgacgaucaAGCAGAUGACGGuaaacucCGCCg -3'
miRNA:   3'- -GC-AGG-CUCCU-------------UCGUCUGCUGCU-------GUGG- -5'
10312 5' -54.3 NC_002687.1 + 106295 0.72 0.909609
Target:  5'- aCGUCUuGGGAaaaguuGGCAaGCGACGGCGCUc -3'
miRNA:   3'- -GCAGGcUCCU------UCGUcUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 108702 0.72 0.884453
Target:  5'- aGUCCcaucaauGAGGAcGCAGGCGACcgagauGGCACUg -3'
miRNA:   3'- gCAGG-------CUCCUuCGUCUGCUG------CUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 109027 0.73 0.871646
Target:  5'- gCGUCUGAucuugucggcGGAAGCAucGGCGcUGACGCCg -3'
miRNA:   3'- -GCAGGCU----------CCUUCGU--CUGCuGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 109183 0.67 0.987714
Target:  5'- aGUUCaauGAucAAGCuGGGCGACGACGCCg -3'
miRNA:   3'- gCAGG---CUccUUCG-UCUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 109209 0.69 0.966039
Target:  5'- uG-CCaGAGaGGAGCGcGACGcCGGCACCa -3'
miRNA:   3'- gCaGG-CUC-CUUCGU-CUGCuGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 115769 0.74 0.826827
Target:  5'- uCGUucUCGAcGAGGCAGAcuCGAUGACACCu -3'
miRNA:   3'- -GCA--GGCUcCUUCGUCU--GCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 117563 0.68 0.986229
Target:  5'- gGUuuGuucGGAGCAccggcGAUGGCGACGCCu -3'
miRNA:   3'- gCAggCuc-CUUCGU-----CUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 117808 0.7 0.956111
Target:  5'- uCGUUCGAc---GCAGGCG-CGGCACCg -3'
miRNA:   3'- -GCAGGCUccuuCGUCUGCuGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 117898 0.7 0.956111
Target:  5'- uCGUUCGAc---GCAGGCG-CGGCACCg -3'
miRNA:   3'- -GCAGGCUccuuCGUCUGCuGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 118352 0.66 0.996202
Target:  5'- -aUCCGuGGGGuGCGGGuucugUGGCGACACg -3'
miRNA:   3'- gcAGGCuCCUU-CGUCU-----GCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 119057 0.74 0.802205
Target:  5'- uGUCCGcGGAAGaCAGGuugagguauuugUGugGACACCa -3'
miRNA:   3'- gCAGGCuCCUUC-GUCU------------GCugCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 122369 0.68 0.986229
Target:  5'- uGUCUu-GGuAGCAGuacuugGCGAUGACACCc -3'
miRNA:   3'- gCAGGcuCCuUCGUC------UGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 126008 0.73 0.857418
Target:  5'- aGUCUGGGGAAGaaguuuccauGAgGACGACACg -3'
miRNA:   3'- gCAGGCUCCUUCgu--------CUgCUGCUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.