miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10312 5' -54.3 NC_002687.1 + 2861 0.69 0.971706
Target:  5'- gGUCuCGAGGgcGC---CGAUGGCGCCu -3'
miRNA:   3'- gCAG-GCUCCuuCGucuGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 20852 0.72 0.915213
Target:  5'- uGUUgGAGGcggGGGCGGAgGugGAUGCCu -3'
miRNA:   3'- gCAGgCUCC---UUCGUCUgCugCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 21669 0.67 0.991436
Target:  5'- -cUCCGguGGGGAGCGGACGA-GAC-Ca -3'
miRNA:   3'- gcAGGC--UCCUUCGUCUGCUgCUGuGg -5'
10312 5' -54.3 NC_002687.1 + 25248 0.69 0.976658
Target:  5'- gGUgaUGAaGAAGCAGcACGACGGCACa -3'
miRNA:   3'- gCAg-GCUcCUUCGUC-UGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 25597 0.7 0.952022
Target:  5'- aCGUuuGGagacagcGGAAGCGucugucguuGACGAcCGACACCa -3'
miRNA:   3'- -GCAggCU-------CCUUCGU---------CUGCU-GCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 37713 0.67 0.993376
Target:  5'- gGUCCGAGGuGGCuGguGCGuCGGCAa- -3'
miRNA:   3'- gCAGGCUCCuUCGuC--UGCuGCUGUgg -5'
10312 5' -54.3 NC_002687.1 + 39180 0.66 0.995611
Target:  5'- uCGUgaUGAgGGGAGCGGACGuCGAUugUc -3'
miRNA:   3'- -GCAg-GCU-CCUUCGUCUGCuGCUGugG- -5'
10312 5' -54.3 NC_002687.1 + 40162 0.68 0.98285
Target:  5'- --aUCGugguGGGAGGCGuGGCGACGugGCUa -3'
miRNA:   3'- gcaGGC----UCCUUCGU-CUGCUGCugUGG- -5'
10312 5' -54.3 NC_002687.1 + 41263 0.78 0.606698
Target:  5'- uCGUCgGAGGAGuUAGACGAUGGCGCa -3'
miRNA:   3'- -GCAGgCUCCUUcGUCUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 56522 0.66 0.99542
Target:  5'- cCGUCUc-GGAAuCAGACGACGAgucgcuuacggcguCGCCa -3'
miRNA:   3'- -GCAGGcuCCUUcGUCUGCUGCU--------------GUGG- -5'
10312 5' -54.3 NC_002687.1 + 68375 0.66 0.994947
Target:  5'- cCGUCCcaaaagGAGGAAGCAGACuuuuccaAC-ACGCUa -3'
miRNA:   3'- -GCAGG------CUCCUUCGUCUGc------UGcUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 73336 0.68 0.980942
Target:  5'- -cUCCGGaGAcGguGACGGCGACAgCa -3'
miRNA:   3'- gcAGGCUcCUuCguCUGCUGCUGUgG- -5'
10312 5' -54.3 NC_002687.1 + 75622 0.67 0.988272
Target:  5'- aCGUCgGAGGAccaaacAGCGGGCGAagaagaugaugauguCGACGa- -3'
miRNA:   3'- -GCAGgCUCCU------UCGUCUGCU---------------GCUGUgg -5'
10312 5' -54.3 NC_002687.1 + 75655 1.13 0.006825
Target:  5'- uCGUCCGAGGAAGCAGACGACGACACCa -3'
miRNA:   3'- -GCAGGCUCCUUCGUCUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 77249 0.7 0.952404
Target:  5'- aGUCCGAcauuaGGAgugGGgGGACGACuuGCGCCg -3'
miRNA:   3'- gCAGGCU-----CCU---UCgUCUGCUGc-UGUGG- -5'
10312 5' -54.3 NC_002687.1 + 77677 0.68 0.98285
Target:  5'- --cCCGGaaacaagacGGAcgacaCAGACGACGGCACCg -3'
miRNA:   3'- gcaGGCU---------CCUuc---GUCUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 78518 0.71 0.935504
Target:  5'- gCGuUCCG-GGGAGCGuGACaGACGACcugACCg -3'
miRNA:   3'- -GC-AGGCuCCUUCGU-CUG-CUGCUG---UGG- -5'
10312 5' -54.3 NC_002687.1 + 83368 0.69 0.968965
Target:  5'- uGagCGAGGguGUcGcCGACGACACCg -3'
miRNA:   3'- gCagGCUCCuuCGuCuGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 84298 0.66 0.996202
Target:  5'- uGUCCucGGGGAccuGGcCGGAacacCGACGACgGCCa -3'
miRNA:   3'- gCAGG--CUCCU---UC-GUCU----GCUGCUG-UGG- -5'
10312 5' -54.3 NC_002687.1 + 88583 0.72 0.89777
Target:  5'- aCGgCCGAGGcggaGAGUAGAagcACGACACCu -3'
miRNA:   3'- -GCaGGCUCC----UUCGUCUgc-UGCUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.