miRNA display CGI


Results 1 - 20 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10312 5' -54.3 NC_002687.1 + 41263 0.78 0.606698
Target:  5'- uCGUCgGAGGAGuUAGACGAUGGCGCa -3'
miRNA:   3'- -GCAGgCUCCUUcGUCUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 225650 0.7 0.944373
Target:  5'- uGgagCCGgacAGGggGguGGCGugGGCgGCCg -3'
miRNA:   3'- gCa--GGC---UCCuuCguCUGCugCUG-UGG- -5'
10312 5' -54.3 NC_002687.1 + 25597 0.7 0.952022
Target:  5'- aCGUuuGGagacagcGGAAGCGucugucguuGACGAcCGACACCa -3'
miRNA:   3'- -GCAggCU-------CCUUCGU---------CUGCU-GCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 231970 0.66 0.996726
Target:  5'- aCG-CCGAGGuGGCAaGCGAUcGCGCa -3'
miRNA:   3'- -GCaGGCUCCuUCGUcUGCUGcUGUGg -5'
10312 5' -54.3 NC_002687.1 + 147537 0.73 0.857418
Target:  5'- aCG-CCGAGGAAcucGCGGAUGcugaugcCGACGCCa -3'
miRNA:   3'- -GCaGGCUCCUU---CGUCUGCu------GCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 109027 0.73 0.871646
Target:  5'- gCGUCUGAucuugucggcGGAAGCAucGGCGcUGACGCCg -3'
miRNA:   3'- -GCAGGCU----------CCUUCGU--CUGCuGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 108702 0.72 0.884453
Target:  5'- aGUCCcaucaauGAGGAcGCAGGCGACcgagauGGCACUg -3'
miRNA:   3'- gCAGG-------CUCCUuCGUCUGCUG------CUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 283542 0.72 0.903794
Target:  5'- aGUCaCGAGGggGCu--CG-CGACACUa -3'
miRNA:   3'- gCAG-GCUCCuuCGucuGCuGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 199542 0.72 0.913554
Target:  5'- uCGgauaCGAGGGacauguccccgccgAGCAGACGAC-ACACCu -3'
miRNA:   3'- -GCag--GCUCCU--------------UCGUCUGCUGcUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 199782 0.71 0.9396
Target:  5'- gGUcCCGAGGGGauacgguGguGGCGAUuGGCACCg -3'
miRNA:   3'- gCA-GGCUCCUU-------CguCUGCUG-CUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 223588 0.71 0.930751
Target:  5'- gGUcCCGGGGGAGgGGG-GugGugGCCg -3'
miRNA:   3'- gCA-GGCUCCUUCgUCUgCugCugUGG- -5'
10312 5' -54.3 NC_002687.1 + 106295 0.72 0.909609
Target:  5'- aCGUCUuGGGAaaaguuGGCAaGCGACGGCGCUc -3'
miRNA:   3'- -GCAGGcUCCU------UCGUcUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 329799 0.75 0.785092
Target:  5'- gCGUggCCgGAGGAGaggccGCAGGCGACGACAUg -3'
miRNA:   3'- -GCA--GG-CUCCUU-----CGUCUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 239311 0.71 0.930751
Target:  5'- gCGUCuCGAGGAcgAGU--ACGACGACAgCu -3'
miRNA:   3'- -GCAG-GCUCCU--UCGucUGCUGCUGUgG- -5'
10312 5' -54.3 NC_002687.1 + 217579 0.75 0.793714
Target:  5'- cCGUaccgcaaCGGGGuGGCGGGCGGCGAUugCu -3'
miRNA:   3'- -GCAg------GCUCCuUCGUCUGCUGCUGugG- -5'
10312 5' -54.3 NC_002687.1 + 326843 0.72 0.903794
Target:  5'- --gUgGuGGAGGUAGACGACGGCaACCc -3'
miRNA:   3'- gcaGgCuCCUUCGUCUGCUGCUG-UGG- -5'
10312 5' -54.3 NC_002687.1 + 214978 0.71 0.935504
Target:  5'- uCGUUCGAcaccgGcGggGCcgaGGGCGGCGACAUCg -3'
miRNA:   3'- -GCAGGCU-----C-CuuCG---UCUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 226211 0.7 0.948492
Target:  5'- aG-CCGgacAGGggGguGGCGugGGCgGCCg -3'
miRNA:   3'- gCaGGC---UCCuuCguCUGCugCUG-UGG- -5'
10312 5' -54.3 NC_002687.1 + 247473 0.73 0.857418
Target:  5'- gCGUCCGcacAGGAAGUAGACuuCGACuagggcuuGCCa -3'
miRNA:   3'- -GCAGGC---UCCUUCGUCUGcuGCUG--------UGG- -5'
10312 5' -54.3 NC_002687.1 + 326907 0.73 0.878474
Target:  5'- aCGU-CGGGGGAGCAcGACugGACGACuCCa -3'
miRNA:   3'- -GCAgGCUCCUUCGU-CUG--CUGCUGuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.