miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10312 5' -54.3 NC_002687.1 + 75655 1.13 0.006825
Target:  5'- uCGUCCGAGGAAGCAGACGACGACACCa -3'
miRNA:   3'- -GCAGGCUCCUUCGUCUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 327582 0.79 0.568314
Target:  5'- gGUaaaCGcGGAAGCAGAUGGCGACGCa -3'
miRNA:   3'- gCAg--GCuCCUUCGUCUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 41263 0.78 0.606698
Target:  5'- uCGUCgGAGGAGuUAGACGAUGGCGCa -3'
miRNA:   3'- -GCAGgCUCCUUcGUCUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 330836 0.77 0.655005
Target:  5'- aGUCCGAGGGAGgGGACGAguaaaGaAUACCu -3'
miRNA:   3'- gCAGGCUCCUUCgUCUGCUg----C-UGUGG- -5'
10312 5' -54.3 NC_002687.1 + 329799 0.75 0.785092
Target:  5'- gCGUggCCgGAGGAGaggccGCAGGCGACGACAUg -3'
miRNA:   3'- -GCA--GG-CUCCUU-----CGUCUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 217579 0.75 0.793714
Target:  5'- cCGUaccgcaaCGGGGuGGCGGGCGGCGAUugCu -3'
miRNA:   3'- -GCAg------GCUCCuUCGUCUGCUGCUGugG- -5'
10312 5' -54.3 NC_002687.1 + 119057 0.74 0.802205
Target:  5'- uGUCCGcGGAAGaCAGGuugagguauuugUGugGACACCa -3'
miRNA:   3'- gCAGGCuCCUUC-GUCU------------GCugCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 115769 0.74 0.826827
Target:  5'- uCGUucUCGAcGAGGCAGAcuCGAUGACACCu -3'
miRNA:   3'- -GCA--GGCUcCUUCGUCU--GCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 170419 0.74 0.842464
Target:  5'- gCGUCgGuuGcuGUAGACGACGACAUCg -3'
miRNA:   3'- -GCAGgCucCuuCGUCUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 147537 0.73 0.857418
Target:  5'- aCG-CCGAGGAAcucGCGGAUGcugaugcCGACGCCa -3'
miRNA:   3'- -GCaGGCUCCUU---CGUCUGCu------GCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 247473 0.73 0.857418
Target:  5'- gCGUCCGcacAGGAAGUAGACuuCGACuagggcuuGCCa -3'
miRNA:   3'- -GCAGGC---UCCUUCGUCUGcuGCUG--------UGG- -5'
10312 5' -54.3 NC_002687.1 + 126008 0.73 0.857418
Target:  5'- aGUCUGGGGAAGaaguuuccauGAgGACGACACg -3'
miRNA:   3'- gCAGGCUCCUUCgu--------CUgCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 109027 0.73 0.871646
Target:  5'- gCGUCUGAucuugucggcGGAAGCAucGGCGcUGACGCCg -3'
miRNA:   3'- -GCAGGCU----------CCUUCGU--CUGCuGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 154447 0.73 0.871646
Target:  5'- cCGUCgUGuucuGGAGGC-GACGACGcACGCCg -3'
miRNA:   3'- -GCAG-GCu---CCUUCGuCUGCUGC-UGUGG- -5'
10312 5' -54.3 NC_002687.1 + 326907 0.73 0.878474
Target:  5'- aCGU-CGGGGGAGCAcGACugGACGACuCCa -3'
miRNA:   3'- -GCAgGCUCCUUCGU-CUG--CUGCUGuGG- -5'
10312 5' -54.3 NC_002687.1 + 108702 0.72 0.884453
Target:  5'- aGUCCcaucaauGAGGAcGCAGGCGACcgagauGGCACUg -3'
miRNA:   3'- gCAGG-------CUCCUuCGUCUGCUG------CUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 90089 0.72 0.885107
Target:  5'- aGga-GAGGAGGUuucuACGACGACACCg -3'
miRNA:   3'- gCaggCUCCUUCGuc--UGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 88583 0.72 0.89777
Target:  5'- aCGgCCGAGGcggaGAGUAGAagcACGACACCu -3'
miRNA:   3'- -GCaGGCUCC----UUCGUCUgc-UGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 283542 0.72 0.903794
Target:  5'- aGUCaCGAGGggGCu--CG-CGACACUa -3'
miRNA:   3'- gCAG-GCUCCuuCGucuGCuGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 326843 0.72 0.903794
Target:  5'- --gUgGuGGAGGUAGACGACGGCaACCc -3'
miRNA:   3'- gcaGgCuCCUUCGUCUGCUGCUG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.