miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10312 5' -54.3 NC_002687.1 + 256474 0.66 0.996918
Target:  5'- gGUCCuguguuagcgcagagGAGGAGGaagaAGACGAagcUGACGCg -3'
miRNA:   3'- gCAGG---------------CUCCUUCg---UCUGCU---GCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 227481 0.66 0.995611
Target:  5'- uGUCCGuGGGAGguGGcCGcucgcaaccAUGACugCg -3'
miRNA:   3'- gCAGGCuCCUUCguCU-GC---------UGCUGugG- -5'
10312 5' -54.3 NC_002687.1 + 39180 0.66 0.995611
Target:  5'- uCGUgaUGAgGGGAGCGGACGuCGAUugUc -3'
miRNA:   3'- -GCAg-GCU-CCUUCGUCUGCuGCUGugG- -5'
10312 5' -54.3 NC_002687.1 + 231970 0.66 0.996726
Target:  5'- aCG-CCGAGGuGGCAaGCGAUcGCGCa -3'
miRNA:   3'- -GCaGGCUCCuUCGUcUGCUGcUGUGg -5'
10312 5' -54.3 NC_002687.1 + 237208 0.66 0.994947
Target:  5'- ---aCGAGaaGAGGCAuccGACG-CGACACCa -3'
miRNA:   3'- gcagGCUC--CUUCGU---CUGCuGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 104786 0.66 0.994205
Target:  5'- gGagUGAGGAGGgAuucGAUGGCGACACa -3'
miRNA:   3'- gCagGCUCCUUCgU---CUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 277138 0.66 0.994947
Target:  5'- uCGUCCGAuGGccGCcGACGA-GGCAgCg -3'
miRNA:   3'- -GCAGGCU-CCuuCGuCUGCUgCUGUgG- -5'
10312 5' -54.3 NC_002687.1 + 56522 0.66 0.99542
Target:  5'- cCGUCUc-GGAAuCAGACGACGAgucgcuuacggcguCGCCa -3'
miRNA:   3'- -GCAGGcuCCUUcGUCUGCUGCU--------------GUGG- -5'
10312 5' -54.3 NC_002687.1 + 295224 0.66 0.994205
Target:  5'- cCGUCuCGGGGucGUGGGCGuacuCGAUGCa -3'
miRNA:   3'- -GCAG-GCUCCuuCGUCUGCu---GCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 180400 0.66 0.995611
Target:  5'- gGUCCGAcGGuguCAGAUGuagccGCGGCACUg -3'
miRNA:   3'- gCAGGCU-CCuucGUCUGC-----UGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 104707 0.66 0.994512
Target:  5'- -cUUCGAGGGaccAGCcgaAGACGACGAguacguggguggccaCGCCg -3'
miRNA:   3'- gcAGGCUCCU---UCG---UCUGCUGCU---------------GUGG- -5'
10312 5' -54.3 NC_002687.1 + 97587 0.66 0.994205
Target:  5'- aCGcCCaGGGGAAucgguGCuGGgGAUGACGCCg -3'
miRNA:   3'- -GCaGG-CUCCUU-----CGuCUgCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 118352 0.66 0.996202
Target:  5'- -aUCCGuGGGGuGCGGGuucugUGGCGACACg -3'
miRNA:   3'- gcAGGCuCCUU-CGUCU-----GCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 131043 0.66 0.996202
Target:  5'- --cCCGAGGAguAGCucccgGACGAUGCCg -3'
miRNA:   3'- gcaGGCUCCU--UCGucug-CUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 137584 0.66 0.996202
Target:  5'- cCGUCgGAGGAGuCuGugGAUuuGAUACCc -3'
miRNA:   3'- -GCAGgCUCCUUcGuCugCUG--CUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 209021 0.66 0.996202
Target:  5'- uCGUCCGcAGGGucccuGgGGuCGuucuCGGCACCa -3'
miRNA:   3'- -GCAGGC-UCCUu----CgUCuGCu---GCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 209093 0.66 0.996202
Target:  5'- uCGUCCGcAGGGucucuGgGGuCGuucuCGGCACCa -3'
miRNA:   3'- -GCAGGC-UCCUu----CgUCuGCu---GCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 316198 0.66 0.995611
Target:  5'- gGUgCGGcGGGAucuucggguGCGG-CGGCGGCACCc -3'
miRNA:   3'- gCAgGCU-CCUU---------CGUCuGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 68375 0.66 0.994947
Target:  5'- cCGUCCcaaaagGAGGAAGCAGACuuuuccaAC-ACGCUa -3'
miRNA:   3'- -GCAGG------CUCCUUCGUCUGc------UGcUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 270928 0.66 0.994947
Target:  5'- --aCCGAGuGGGCGGGugcCGugGACAUCc -3'
miRNA:   3'- gcaGGCUCcUUCGUCU---GCugCUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.