miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10312 5' -54.3 NC_002687.1 + 117898 0.7 0.956111
Target:  5'- uCGUUCGAc---GCAGGCG-CGGCACCg -3'
miRNA:   3'- -GCAGGCUccuuCGUCUGCuGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 25597 0.7 0.952022
Target:  5'- aCGUuuGGagacagcGGAAGCGucugucguuGACGAcCGACACCa -3'
miRNA:   3'- -GCAggCU-------CCUUCGU---------CUGCU-GCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 106295 0.72 0.909609
Target:  5'- aCGUCUuGGGAaaaguuGGCAaGCGACGGCGCUc -3'
miRNA:   3'- -GCAGGcUCCU------UCGUcUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 247473 0.73 0.857418
Target:  5'- gCGUCCGcacAGGAAGUAGACuuCGACuagggcuuGCCa -3'
miRNA:   3'- -GCAGGC---UCCUUCGUCUGcuGCUG--------UGG- -5'
10312 5' -54.3 NC_002687.1 + 40162 0.68 0.98285
Target:  5'- --aUCGugguGGGAGGCGuGGCGACGugGCUa -3'
miRNA:   3'- gcaGGC----UCCUUCGU-CUGCUGCugUGG- -5'
10312 5' -54.3 NC_002687.1 + 2861 0.69 0.971706
Target:  5'- gGUCuCGAGGgcGC---CGAUGGCGCCu -3'
miRNA:   3'- gCAG-GCUCCuuCGucuGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 225650 0.7 0.944373
Target:  5'- uGgagCCGgacAGGggGguGGCGugGGCgGCCg -3'
miRNA:   3'- gCa--GGC---UCCuuCguCUGCugCUG-UGG- -5'
10312 5' -54.3 NC_002687.1 + 217579 0.75 0.793714
Target:  5'- cCGUaccgcaaCGGGGuGGCGGGCGGCGAUugCu -3'
miRNA:   3'- -GCAg------GCUCCuUCGUCUGCUGCUGugG- -5'
10312 5' -54.3 NC_002687.1 + 83368 0.69 0.968965
Target:  5'- uGagCGAGGguGUcGcCGACGACACCg -3'
miRNA:   3'- gCagGCUCCuuCGuCuGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 329799 0.75 0.785092
Target:  5'- gCGUggCCgGAGGAGaggccGCAGGCGACGACAUg -3'
miRNA:   3'- -GCA--GG-CUCCUU-----CGUCUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 226211 0.7 0.948492
Target:  5'- aG-CCGgacAGGggGguGGCGugGGCgGCCg -3'
miRNA:   3'- gCaGGC---UCCuuCguCUGCugCUG-UGG- -5'
10312 5' -54.3 NC_002687.1 + 331020 0.7 0.956111
Target:  5'- --aCCGGGcGGAGCAGAgacagcuacugUGcACGGCACCa -3'
miRNA:   3'- gcaGGCUC-CUUCGUCU-----------GC-UGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 239311 0.71 0.930751
Target:  5'- gCGUCuCGAGGAcgAGU--ACGACGACAgCu -3'
miRNA:   3'- -GCAG-GCUCCU--UCGucUGCUGCUGUgG- -5'
10312 5' -54.3 NC_002687.1 + 199542 0.72 0.913554
Target:  5'- uCGgauaCGAGGGacauguccccgccgAGCAGACGAC-ACACCu -3'
miRNA:   3'- -GCag--GCUCCU--------------UCGUCUGCUGcUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 108702 0.72 0.884453
Target:  5'- aGUCCcaucaauGAGGAcGCAGGCGACcgagauGGCACUg -3'
miRNA:   3'- gCAGG-------CUCCUuCGUCUGCUG------CUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 147537 0.73 0.857418
Target:  5'- aCG-CCGAGGAAcucGCGGAUGcugaugcCGACGCCa -3'
miRNA:   3'- -GCaGGCUCCUU---CGUCUGCu------GCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 117563 0.68 0.986229
Target:  5'- gGUuuGuucGGAGCAccggcGAUGGCGACGCCu -3'
miRNA:   3'- gCAggCuc-CUUCGU-----CUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 249694 0.68 0.98461
Target:  5'- aGUCaGAGGAGGCA----GCGACGCUa -3'
miRNA:   3'- gCAGgCUCCUUCGUcugcUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 225035 0.68 0.980942
Target:  5'- gCGUCCGAGacAAGgAGACGACugUGCCg -3'
miRNA:   3'- -GCAGGCUCc-UUCgUCUGCUGcuGUGG- -5'
10312 5' -54.3 NC_002687.1 + 169240 0.69 0.974268
Target:  5'- aG-CUGAGGAGGUu--CGGCGGCACa -3'
miRNA:   3'- gCaGGCUCCUUCGucuGCUGCUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.