miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 3' -56.1 NC_002687.1 + 227195 0.66 0.973506
Target:  5'- cCACCAUCAucGUUcaccgcucCGCCACCGCc -3'
miRNA:   3'- aGUGGUGGUucCAGaac-----GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 270743 0.66 0.973506
Target:  5'- -aGCCugUAucGUCUgcucuuugGCGCCACgGCu -3'
miRNA:   3'- agUGGugGUucCAGAa-------CGCGGUGgCG- -5'
10315 3' -56.1 NC_002687.1 + 234782 0.66 0.982327
Target:  5'- cUCGCCuuuucagcuuCUucGGcCUUGUGCUugCGCa -3'
miRNA:   3'- -AGUGGu---------GGuuCCaGAACGCGGugGCG- -5'
10315 3' -56.1 NC_002687.1 + 159954 0.66 0.978245
Target:  5'- -gGCgGCCAAGG-Ca---GCCGCCGCc -3'
miRNA:   3'- agUGgUGGUUCCaGaacgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 203451 0.66 0.982327
Target:  5'- gCACCACCuc-GUacc-CGCCGCCGUa -3'
miRNA:   3'- aGUGGUGGuucCAgaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 294726 0.66 0.975243
Target:  5'- -gGCCACCGAGaUCaUUuggcugcuccccgcGCGCgCGCCGCu -3'
miRNA:   3'- agUGGUGGUUCcAG-AA--------------CGCG-GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 103833 0.66 0.982327
Target:  5'- cUCugCACCc--GUCUUGaaCGCCugUGCc -3'
miRNA:   3'- -AGugGUGGuucCAGAAC--GCGGugGCG- -5'
10315 3' -56.1 NC_002687.1 + 182375 0.66 0.980365
Target:  5'- gUCAUCGCCGauAGGUgUUGCGCgUGCUuucgGCu -3'
miRNA:   3'- -AGUGGUGGU--UCCAgAACGCG-GUGG----CG- -5'
10315 3' -56.1 NC_002687.1 + 85431 0.67 0.961863
Target:  5'- -gGCCcUCAGGGUCcuaagGgGCCGCCGg -3'
miRNA:   3'- agUGGuGGUUCCAGaa---CgCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 213065 0.67 0.96412
Target:  5'- aUCACC-CCA---UCUUGCGCCgaucggaauuuuguACCGUa -3'
miRNA:   3'- -AGUGGuGGUuccAGAACGCGG--------------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 308266 0.67 0.961863
Target:  5'- cUCACCACCccagaccAGGUCUcuccgcGCGCCucCUGUc -3'
miRNA:   3'- -AGUGGUGGu------UCCAGAa-----CGCGGu-GGCG- -5'
10315 3' -56.1 NC_002687.1 + 114022 0.67 0.958471
Target:  5'- gCACCACCAAGuacauuguuGUCca-CGCCACCa- -3'
miRNA:   3'- aGUGGUGGUUC---------CAGaacGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 226510 0.67 0.96806
Target:  5'- gCGCCGCU-GGGaCUgaugGCGCCGCUGg -3'
miRNA:   3'- aGUGGUGGuUCCaGAa---CGCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 307258 0.67 0.965058
Target:  5'- cCACCACCAGcac----CGCCGCCGCc -3'
miRNA:   3'- aGUGGUGGUUccagaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 224568 0.67 0.970874
Target:  5'- aUCGCCACCGccac----CGCCACCGCc -3'
miRNA:   3'- -AGUGGUGGUuccagaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 85533 0.67 0.961863
Target:  5'- aUCugUACaGGGG-CUuguUGUGCCGCUGCg -3'
miRNA:   3'- -AGugGUGgUUCCaGA---ACGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 209348 0.67 0.961863
Target:  5'- aCACCAaugucuCCcAGGUCUgaaaCGUUACCGCu -3'
miRNA:   3'- aGUGGU------GGuUCCAGAac--GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 10677 0.67 0.958471
Target:  5'- cCGCCGCCAcuGcCgc-CGCCACUGCu -3'
miRNA:   3'- aGUGGUGGUucCaGaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 305887 0.67 0.954878
Target:  5'- -gAgCGCCGAGGUUaacgGCGCCAUUGg -3'
miRNA:   3'- agUgGUGGUUCCAGaa--CGCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 211993 0.67 0.96806
Target:  5'- cCAUCGCCAAcGUCUUGCcGUUcgACUGCu -3'
miRNA:   3'- aGUGGUGGUUcCAGAACG-CGG--UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.