miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 3' -56.1 NC_002687.1 + 81678 0.65 0.98361
Target:  5'- -aGCCGa-AAGGUCUUgcacgucuugacuaGCGCCACCa- -3'
miRNA:   3'- agUGGUggUUCCAGAA--------------CGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 181805 0.65 0.98361
Target:  5'- uUCAUCcCCGcauagguuucgcacGGuGUCUUGUGCgACUGCg -3'
miRNA:   3'- -AGUGGuGGU--------------UC-CAGAACGCGgUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 103833 0.66 0.982327
Target:  5'- cUCugCACCc--GUCUUGaaCGCCugUGCc -3'
miRNA:   3'- -AGugGUGGuucCAGAAC--GCGGugGCG- -5'
10315 3' -56.1 NC_002687.1 + 295566 0.66 0.975961
Target:  5'- -gGCCGCaaCGGGGUCgUGCggGCauaGCCGCa -3'
miRNA:   3'- agUGGUG--GUUCCAGaACG--CGg--UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 18523 0.66 0.978245
Target:  5'- gCGCCcCCAAGGacagagcUUUGCGUCGCUGg -3'
miRNA:   3'- aGUGGuGGUUCCa------GAACGCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 294726 0.66 0.975243
Target:  5'- -gGCCACCGAGaUCaUUuggcugcuccccgcGCGCgCGCCGCu -3'
miRNA:   3'- agUGGUGGUUCcAG-AA--------------CGCG-GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 165581 0.66 0.973506
Target:  5'- gUCGaCACCGAGGUC-UGgGaCCAUCGg -3'
miRNA:   3'- -AGUgGUGGUUCCAGaACgC-GGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 146447 0.66 0.975723
Target:  5'- aCGCCGCCAauaggguaucgugGGGUCgcgagGCuCCGuuGCu -3'
miRNA:   3'- aGUGGUGGU-------------UCCAGaa---CGcGGUggCG- -5'
10315 3' -56.1 NC_002687.1 + 309228 0.66 0.975723
Target:  5'- uUCGCCAUCA-------GCGCCACCGUu -3'
miRNA:   3'- -AGUGGUGGUuccagaaCGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 204634 0.66 0.973506
Target:  5'- gUACCGCgCAcGG-CUUGUuCCACUGCa -3'
miRNA:   3'- aGUGGUG-GUuCCaGAACGcGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 101937 0.66 0.975961
Target:  5'- gCGCuCGCCGAGuGUCacaUGCGaCAUCGCc -3'
miRNA:   3'- aGUG-GUGGUUC-CAGa--ACGCgGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 44339 0.66 0.973506
Target:  5'- gCAUCGgguUCAGGGUCUccgucUGCGCCGgccuCCGUc -3'
miRNA:   3'- aGUGGU---GGUUCCAGA-----ACGCGGU----GGCG- -5'
10315 3' -56.1 NC_002687.1 + 203451 0.66 0.982327
Target:  5'- gCACCACCuc-GUacc-CGCCGCCGUa -3'
miRNA:   3'- aGUGGUGGuucCAgaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 234782 0.66 0.982327
Target:  5'- cUCGCCuuuucagcuuCUucGGcCUUGUGCUugCGCa -3'
miRNA:   3'- -AGUGGu---------GGuuCCaGAACGCGGugGCG- -5'
10315 3' -56.1 NC_002687.1 + 148091 0.66 0.980365
Target:  5'- uUCAuUCACCAAgccGGUCgUGCGCgC-CCGUa -3'
miRNA:   3'- -AGU-GGUGGUU---CCAGaACGCG-GuGGCG- -5'
10315 3' -56.1 NC_002687.1 + 182375 0.66 0.980365
Target:  5'- gUCAUCGCCGauAGGUgUUGCGCgUGCUuucgGCu -3'
miRNA:   3'- -AGUGGUGGU--UCCAgAACGCG-GUGG----CG- -5'
10315 3' -56.1 NC_002687.1 + 11544 0.66 0.975961
Target:  5'- uUCGCCACUGAGGUUgcGUGUCaaACCu- -3'
miRNA:   3'- -AGUGGUGGUUCCAGaaCGCGG--UGGcg -5'
10315 3' -56.1 NC_002687.1 + 332889 0.66 0.975961
Target:  5'- aCAagaaCGCCAGGGUg-UGCuGCaGCCGCa -3'
miRNA:   3'- aGUg---GUGGUUCCAgaACG-CGgUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 270743 0.66 0.973506
Target:  5'- -aGCCugUAucGUCUgcucuuugGCGCCACgGCu -3'
miRNA:   3'- agUGGugGUucCAGAa-------CGCGGUGgCG- -5'
10315 3' -56.1 NC_002687.1 + 310301 0.66 0.973506
Target:  5'- gUCAUUACUAGGGUUUagUGUGUgaACCGUg -3'
miRNA:   3'- -AGUGGUGGUUCCAGA--ACGCGg-UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.