miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 3' -56.1 NC_002687.1 + 315334 0.75 0.64949
Target:  5'- aUCGCCAUCAgcaucguccGGGUCUgGCGUCGCCa- -3'
miRNA:   3'- -AGUGGUGGU---------UCCAGAaCGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 154633 0.69 0.918559
Target:  5'- cCGCuCACCAGGccGUUgUGUcgGCCACCGCc -3'
miRNA:   3'- aGUG-GUGGUUC--CAGaACG--CGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 84121 0.69 0.920701
Target:  5'- gCACCGCUucGAGGUCUcgggaacaucucucuUGacgggugaUGCCACCGUg -3'
miRNA:   3'- aGUGGUGG--UUCCAGA---------------AC--------GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 81678 0.65 0.98361
Target:  5'- -aGCCGa-AAGGUCUUgcacgucuugacuaGCGCCACCa- -3'
miRNA:   3'- agUGGUggUUCCAGAA--------------CGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 241519 0.72 0.806609
Target:  5'- aCGCCGCCAccGUUg---GCCACCGCg -3'
miRNA:   3'- aGUGGUGGUucCAGaacgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 194916 0.71 0.823111
Target:  5'- ---aCGCCAGGGUCUUGCuucGCCcaaguucuaGCCGUa -3'
miRNA:   3'- agugGUGGUUCCAGAACG---CGG---------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 66947 0.71 0.83113
Target:  5'- gUCAUCACCAAGGUCaccgGaGUUAUCGCu -3'
miRNA:   3'- -AGUGGUGGUUCCAGaa--CgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 146003 0.71 0.83113
Target:  5'- cCACCGacuUCAAGaaCcUGCGCCGCCGCu -3'
miRNA:   3'- aGUGGU---GGUUCcaGaACGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 211164 0.71 0.846672
Target:  5'- -gACCACC-AGGUCUUccucggggGuCGUCACCGUg -3'
miRNA:   3'- agUGGUGGuUCCAGAA--------C-GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 315818 0.69 0.913053
Target:  5'- cCGCCGCgCcGGGUgc--CGCCGCCGCa -3'
miRNA:   3'- aGUGGUG-GuUCCAgaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 306720 0.7 0.882357
Target:  5'- gUACCGCCgGAGGUCUUGUucaaguGUCACCc- -3'
miRNA:   3'- aGUGGUGG-UUCCAGAACG------CGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 69873 0.71 0.846672
Target:  5'- gCACCACCGucuuGUC-UGCGUcuaCACCGCu -3'
miRNA:   3'- aGUGGUGGUuc--CAGaACGCG---GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 11041 0.74 0.711073
Target:  5'- cCAgCACCAA-GUCUUGCGCCGcaccacacacaacgcCCGCc -3'
miRNA:   3'- aGUgGUGGUUcCAGAACGCGGU---------------GGCG- -5'
10315 3' -56.1 NC_002687.1 + 209286 0.69 0.90675
Target:  5'- -gACCACCcGGGugguuuuUCUuacacUGUGUCGCCGCg -3'
miRNA:   3'- agUGGUGGuUCC-------AGA-----ACGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 309331 0.73 0.762988
Target:  5'- -aACCACCGAGGgcgCUguccgGCGCaugagcgACCGCa -3'
miRNA:   3'- agUGGUGGUUCCa--GAa----CGCGg------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 329623 0.71 0.83113
Target:  5'- aUCuuCACCAGGGUCUcccaCGCgCACCGUu -3'
miRNA:   3'- -AGugGUGGUUCCAGAac--GCG-GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 19081 0.69 0.913053
Target:  5'- ---aCGCCAGGGUCUUGCuUCGCC-Ca -3'
miRNA:   3'- agugGUGGUUCCAGAACGcGGUGGcG- -5'
10315 3' -56.1 NC_002687.1 + 295218 0.69 0.918559
Target:  5'- cCGCUACCGucucgGGGUCguggGCGUacucgaugcauCGCCGCa -3'
miRNA:   3'- aGUGGUGGU-----UCCAGaa--CGCG-----------GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 163002 0.72 0.771953
Target:  5'- aUACaCGCCGAGGUCa-GCGCCAUCa- -3'
miRNA:   3'- aGUG-GUGGUUCCAGaaCGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 220508 0.71 0.823111
Target:  5'- ---aCGCCAGGGUCUUGCuucGCCcaaguucuaGCCGUa -3'
miRNA:   3'- agugGUGGUUCCAGAACG---CGG---------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.