miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 3' -56.1 NC_002687.1 + 80017 1.13 0.003756
Target:  5'- gUCACCACCAAGGUCUUGCGCCACCGCg -3'
miRNA:   3'- -AGUGGUGGUUCCAGAACGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 224480 0.76 0.591239
Target:  5'- cCACCGCCAGcG-CcaGCGCCACCGCc -3'
miRNA:   3'- aGUGGUGGUUcCaGaaCGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 223860 0.75 0.620328
Target:  5'- gUCGCCACCAcGG-CUUcccccgccccCGCCACCGCa -3'
miRNA:   3'- -AGUGGUGGUuCCaGAAc---------GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 315334 0.75 0.64949
Target:  5'- aUCGCCAUCAgcaucguccGGGUCUgGCGUCGCCa- -3'
miRNA:   3'- -AGUGGUGGU---------UCCAGAaCGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 225464 0.74 0.696787
Target:  5'- -uGCCAUCAAGGUgUcaagggucgguguUGCGCCACCa- -3'
miRNA:   3'- agUGGUGGUUCCAgA-------------ACGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 11041 0.74 0.711073
Target:  5'- cCAgCACCAA-GUCUUGCGCCGcaccacacacaacgcCCGCc -3'
miRNA:   3'- aGUgGUGGUUcCAGAACGCGGU---------------GGCG- -5'
10315 3' -56.1 NC_002687.1 + 225248 0.73 0.751179
Target:  5'- -uGCCACCGGGGcccccuuccUCUUGCGUgccgaccgugccggCGCCGCc -3'
miRNA:   3'- agUGGUGGUUCC---------AGAACGCG--------------GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 309331 0.73 0.762988
Target:  5'- -aACCACCGAGGgcgCUguccgGCGCaugagcgACCGCa -3'
miRNA:   3'- agUGGUGGUUCCa--GAa----CGCGg------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 163002 0.72 0.771953
Target:  5'- aUACaCGCCGAGGUCa-GCGCCAUCa- -3'
miRNA:   3'- aGUG-GUGGUUCCAGaaCGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 88126 0.72 0.771953
Target:  5'- -uGCCACCGAGcuGUUcgGCGCCgaucagGCCGCg -3'
miRNA:   3'- agUGGUGGUUC--CAGaaCGCGG------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 122563 0.72 0.798141
Target:  5'- -gGCCGCCAucuucuUCUUG-GCCGCCGCg -3'
miRNA:   3'- agUGGUGGUucc---AGAACgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 241519 0.72 0.806609
Target:  5'- aCGCCGCCAccGUUg---GCCACCGCg -3'
miRNA:   3'- aGUGGUGGUucCAGaacgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 220508 0.71 0.823111
Target:  5'- ---aCGCCAGGGUCUUGCuucGCCcaaguucuaGCCGUa -3'
miRNA:   3'- agugGUGGUUCCAGAACG---CGG---------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 194916 0.71 0.823111
Target:  5'- ---aCGCCAGGGUCUUGCuucGCCcaaguucuaGCCGUa -3'
miRNA:   3'- agugGUGGUUCCAGAACG---CGG---------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 297353 0.71 0.823111
Target:  5'- aUCGCCACCGAGGaCgcGCGCgAUgGUg -3'
miRNA:   3'- -AGUGGUGGUUCCaGaaCGCGgUGgCG- -5'
10315 3' -56.1 NC_002687.1 + 66947 0.71 0.83113
Target:  5'- gUCAUCACCAAGGUCaccgGaGUUAUCGCu -3'
miRNA:   3'- -AGUGGUGGUUCCAGaa--CgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 146003 0.71 0.83113
Target:  5'- cCACCGacuUCAAGaaCcUGCGCCGCCGCu -3'
miRNA:   3'- aGUGGU---GGUUCcaGaACGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 329623 0.71 0.83113
Target:  5'- aUCuuCACCAGGGUCUcccaCGCgCACCGUu -3'
miRNA:   3'- -AGugGUGGUUCCAGAac--GCG-GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 225880 0.71 0.846672
Target:  5'- uUCACCACCcguuGAGGcacccuuccUCUUacguucCGCCGCCGCc -3'
miRNA:   3'- -AGUGGUGG----UUCC---------AGAAc-----GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 69873 0.71 0.846672
Target:  5'- gCACCACCGucuuGUC-UGCGUcuaCACCGCu -3'
miRNA:   3'- aGUGGUGGUuc--CAGaACGCG---GUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.