miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 3' -56.1 NC_002687.1 + 10677 0.67 0.958471
Target:  5'- cCGCCGCCAcuGcCgc-CGCCACUGCu -3'
miRNA:   3'- aGUGGUGGUucCaGaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 11041 0.74 0.711073
Target:  5'- cCAgCACCAA-GUCUUGCGCCGcaccacacacaacgcCCGCc -3'
miRNA:   3'- aGUgGUGGUUcCAGAACGCGGU---------------GGCG- -5'
10315 3' -56.1 NC_002687.1 + 11544 0.66 0.975961
Target:  5'- uUCGCCACUGAGGUUgcGUGUCaaACCu- -3'
miRNA:   3'- -AGUGGUGGUUCCAGaaCGCGG--UGGcg -5'
10315 3' -56.1 NC_002687.1 + 18523 0.66 0.978245
Target:  5'- gCGCCcCCAAGGacagagcUUUGCGUCGCUGg -3'
miRNA:   3'- aGUGGuGGUUCCa------GAACGCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 19081 0.69 0.913053
Target:  5'- ---aCGCCAGGGUCUUGCuUCGCC-Ca -3'
miRNA:   3'- agugGUGGUUCCAGAACGcGGUGGcG- -5'
10315 3' -56.1 NC_002687.1 + 21780 0.68 0.95108
Target:  5'- aUCACCGCCAuaGUCUUcguaGCGCUauaAUCGUa -3'
miRNA:   3'- -AGUGGUGGUucCAGAA----CGCGG---UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 32593 0.68 0.928924
Target:  5'- aUACCuAUCGAguGGUCccGUGCCAUCGCg -3'
miRNA:   3'- aGUGG-UGGUU--CCAGaaCGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 34344 0.7 0.868653
Target:  5'- cUUACgACCAgacaaAGGUUga-CGCCGCCGCu -3'
miRNA:   3'- -AGUGgUGGU-----UCCAGaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 44339 0.66 0.973506
Target:  5'- gCAUCGgguUCAGGGUCUccgucUGCGCCGgccuCCGUc -3'
miRNA:   3'- aGUGGU---GGUUCCAGA-----ACGCGGU----GGCG- -5'
10315 3' -56.1 NC_002687.1 + 57339 0.67 0.958471
Target:  5'- uUCGCgGgCGGuGUCcgUGCGCCGCCGa -3'
miRNA:   3'- -AGUGgUgGUUcCAGa-ACGCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 66947 0.71 0.83113
Target:  5'- gUCAUCACCAAGGUCaccgGaGUUAUCGCu -3'
miRNA:   3'- -AGUGGUGGUUCCAGaa--CgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 69412 0.68 0.946247
Target:  5'- gCACCGCCGAcaccac-CGCCACCGCc -3'
miRNA:   3'- aGUGGUGGUUccagaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 69873 0.71 0.846672
Target:  5'- gCACCACCGucuuGUC-UGCGUcuaCACCGCu -3'
miRNA:   3'- aGUGGUGGUuc--CAGaACGCG---GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 72898 0.67 0.96806
Target:  5'- aCACCGCCGAGca---GUGCCAgUGCg -3'
miRNA:   3'- aGUGGUGGUUCcagaaCGCGGUgGCG- -5'
10315 3' -56.1 NC_002687.1 + 77708 0.68 0.937973
Target:  5'- -gGCCGCCGcgaaugauggugcGGGUUUggGUGCUGCCGUu -3'
miRNA:   3'- agUGGUGGU-------------UCCAGAa-CGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 80017 1.13 0.003756
Target:  5'- gUCACCACCAAGGUCUUGCGCCACCGCg -3'
miRNA:   3'- -AGUGGUGGUUCCAGAACGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 80992 0.68 0.95108
Target:  5'- aUCAUC-CCAAGGcaaacgCccGCGaCCACCGCc -3'
miRNA:   3'- -AGUGGuGGUUCCa-----GaaCGC-GGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 81678 0.65 0.98361
Target:  5'- -aGCCGa-AAGGUCUUgcacgucuugacuaGCGCCACCa- -3'
miRNA:   3'- agUGGUggUUCCAGAA--------------CGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 84121 0.69 0.920701
Target:  5'- gCACCGCUucGAGGUCUcgggaacaucucucuUGacgggugaUGCCACCGUg -3'
miRNA:   3'- aGUGGUGG--UUCCAGA---------------AC--------GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 85431 0.67 0.961863
Target:  5'- -gGCCcUCAGGGUCcuaagGgGCCGCCGg -3'
miRNA:   3'- agUGGuGGUUCCAGaa---CgCGGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.