miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 3' -56.1 NC_002687.1 + 308266 0.67 0.961863
Target:  5'- cUCACCACCccagaccAGGUCUcuccgcGCGCCucCUGUc -3'
miRNA:   3'- -AGUGGUGGu------UCCAGAa-----CGCGGu-GGCG- -5'
10315 3' -56.1 NC_002687.1 + 85533 0.67 0.961863
Target:  5'- aUCugUACaGGGG-CUuguUGUGCCGCUGCg -3'
miRNA:   3'- -AGugGUGgUUCCaGA---ACGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 85431 0.67 0.961863
Target:  5'- -gGCCcUCAGGGUCcuaagGgGCCGCCGg -3'
miRNA:   3'- agUGGuGGUUCCAGaa---CgCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 295800 0.67 0.959852
Target:  5'- uUCGuCCACCGcGG-CUUGCaacacccucagcuccGCCACCGa -3'
miRNA:   3'- -AGU-GGUGGUuCCaGAACG---------------CGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 10677 0.67 0.958471
Target:  5'- cCGCCGCCAcuGcCgc-CGCCACUGCu -3'
miRNA:   3'- aGUGGUGGUucCaGaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 57339 0.67 0.958471
Target:  5'- uUCGCgGgCGGuGUCcgUGCGCCGCCGa -3'
miRNA:   3'- -AGUGgUgGUUcCAGa-ACGCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 115195 0.67 0.958471
Target:  5'- -uGCCACCGGGGUCguacucgacGC-CCGCCa- -3'
miRNA:   3'- agUGGUGGUUCCAGaa-------CGcGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 114022 0.67 0.958471
Target:  5'- gCACCACCAAGuacauuguuGUCca-CGCCACCa- -3'
miRNA:   3'- aGUGGUGGUUC---------CAGaacGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 305887 0.67 0.954878
Target:  5'- -gAgCGCCGAGGUUaacgGCGCCAUUGg -3'
miRNA:   3'- agUgGUGGUUCCAGaa--CGCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 295648 0.68 0.95108
Target:  5'- gUACUACCGAGGUCgaGCGaaugaugaagcaUC-CCGCg -3'
miRNA:   3'- aGUGGUGGUUCCAGaaCGC------------GGuGGCG- -5'
10315 3' -56.1 NC_002687.1 + 21780 0.68 0.95108
Target:  5'- aUCACCGCCAuaGUCUUcguaGCGCUauaAUCGUa -3'
miRNA:   3'- -AGUGGUGGUucCAGAA----CGCGG---UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 209139 0.68 0.95108
Target:  5'- cUCGgCACCAAcgucgucguGGUCgucGuCGUCACCGCu -3'
miRNA:   3'- -AGUgGUGGUU---------CCAGaa-C-GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 209067 0.68 0.95108
Target:  5'- cUCGgCACCAAcgucgucguGGUCgucGuCGUCACCGCu -3'
miRNA:   3'- -AGUgGUGGUU---------CCAGaa-C-GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 247886 0.68 0.95108
Target:  5'- uUCGCCACCAAuc-CUUGU-CCAUCGCu -3'
miRNA:   3'- -AGUGGUGGUUccaGAACGcGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 80992 0.68 0.95108
Target:  5'- aUCAUC-CCAAGGcaaacgCccGCGaCCACCGCc -3'
miRNA:   3'- -AGUGGuGGUUCCa-----GaaCGC-GGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 126448 0.68 0.95108
Target:  5'- -uGCCGCC-GGGUCgaggaGCGCCcagguuGCUGCu -3'
miRNA:   3'- agUGGUGGuUCCAGaa---CGCGG------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 331895 0.68 0.947074
Target:  5'- aUCGCCuCCAcGccCaaGCGCCGCCGCc -3'
miRNA:   3'- -AGUGGuGGUuCcaGaaCGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 302549 0.68 0.947074
Target:  5'- cUACCGagCAGGGUgaUGCGCCACaaggGCc -3'
miRNA:   3'- aGUGGUg-GUUCCAgaACGCGGUGg---CG- -5'
10315 3' -56.1 NC_002687.1 + 224510 0.68 0.947074
Target:  5'- cCACCGCCAGcG-CcaGCGCCAgCGCc -3'
miRNA:   3'- aGUGGUGGUUcCaGaaCGCGGUgGCG- -5'
10315 3' -56.1 NC_002687.1 + 69412 0.68 0.946247
Target:  5'- gCACCGCCGAcaccac-CGCCACCGCc -3'
miRNA:   3'- aGUGGUGGUUccagaacGCGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.