miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 3' -56.1 NC_002687.1 + 85533 0.67 0.961863
Target:  5'- aUCugUACaGGGG-CUuguUGUGCCGCUGCg -3'
miRNA:   3'- -AGugGUGgUUCCaGA---ACGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 88126 0.72 0.771953
Target:  5'- -uGCCACCGAGcuGUUcgGCGCCgaucagGCCGCg -3'
miRNA:   3'- agUGGUGGUUC--CAGaaCGCGG------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 88564 0.66 0.980365
Target:  5'- -uGCCGCCGAacucgcGG-CccGCGCCAgCGCg -3'
miRNA:   3'- agUGGUGGUU------CCaGaaCGCGGUgGCG- -5'
10315 3' -56.1 NC_002687.1 + 89713 0.69 0.92385
Target:  5'- gUCuCCGCCGAGGUCg-GUGUCGUCGUa -3'
miRNA:   3'- -AGuGGUGGUUCCAGaaCGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 101937 0.66 0.975961
Target:  5'- gCGCuCGCCGAGuGUCacaUGCGaCAUCGCc -3'
miRNA:   3'- aGUG-GUGGUUC-CAGa--ACGCgGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 103018 0.67 0.96806
Target:  5'- -gGCCGCCAAGGcCacgaaggcUGCaGCCaagGCCGCc -3'
miRNA:   3'- agUGGUGGUUCCaGa-------ACG-CGG---UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 103833 0.66 0.982327
Target:  5'- cUCugCACCc--GUCUUGaaCGCCugUGCc -3'
miRNA:   3'- -AGugGUGGuucCAGAAC--GCGGugGCG- -5'
10315 3' -56.1 NC_002687.1 + 107745 0.67 0.96806
Target:  5'- gCAuCCGCCGcGGaCUUG-GCaCGCCGCg -3'
miRNA:   3'- aGU-GGUGGUuCCaGAACgCG-GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 114022 0.67 0.958471
Target:  5'- gCACCACCAAGuacauuguuGUCca-CGCCACCa- -3'
miRNA:   3'- aGUGGUGGUUC---------CAGaacGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 115195 0.67 0.958471
Target:  5'- -uGCCACCGGGGUCguacucgacGC-CCGCCa- -3'
miRNA:   3'- agUGGUGGUUCCAGaa-------CGcGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 122563 0.72 0.798141
Target:  5'- -gGCCGCCAucuucuUCUUG-GCCGCCGCg -3'
miRNA:   3'- agUGGUGGUucc---AGAACgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 126448 0.68 0.95108
Target:  5'- -uGCCGCC-GGGUCgaggaGCGCCcagguuGCUGCu -3'
miRNA:   3'- agUGGUGGuUCCAGaa---CGCGG------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 140727 0.66 0.982327
Target:  5'- -gGCCGCCAAGGaCUUGCuGUUACa-- -3'
miRNA:   3'- agUGGUGGUUCCaGAACG-CGGUGgcg -5'
10315 3' -56.1 NC_002687.1 + 146003 0.71 0.83113
Target:  5'- cCACCGacuUCAAGaaCcUGCGCCGCCGCu -3'
miRNA:   3'- aGUGGU---GGUUCcaGaACGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 146447 0.66 0.975723
Target:  5'- aCGCCGCCAauaggguaucgugGGGUCgcgagGCuCCGuuGCu -3'
miRNA:   3'- aGUGGUGGU-------------UCCAGaa---CGcGGUggCG- -5'
10315 3' -56.1 NC_002687.1 + 148091 0.66 0.980365
Target:  5'- uUCAuUCACCAAgccGGUCgUGCGCgC-CCGUa -3'
miRNA:   3'- -AGU-GGUGGUU---CCAGaACGCG-GuGGCG- -5'
10315 3' -56.1 NC_002687.1 + 154633 0.69 0.918559
Target:  5'- cCGCuCACCAGGccGUUgUGUcgGCCACCGCc -3'
miRNA:   3'- aGUG-GUGGUUC--CAGaACG--CGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 159954 0.66 0.978245
Target:  5'- -gGCgGCCAAGG-Ca---GCCGCCGCc -3'
miRNA:   3'- agUGgUGGUUCCaGaacgCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 162229 0.67 0.96806
Target:  5'- aUCACCgGCCAAGGaugUUUcGCcacuaCCACCGCc -3'
miRNA:   3'- -AGUGG-UGGUUCCa--GAA-CGc----GGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 163002 0.72 0.771953
Target:  5'- aUACaCGCCGAGGUCa-GCGCCAUCa- -3'
miRNA:   3'- aGUG-GUGGUUCCAGaaCGCGGUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.