miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10319 3' -54.3 NC_002687.1 + 19976 0.68 0.974439
Target:  5'- cUCcGCCAGGUUGUAgAGCuuCGuCGc -3'
miRNA:   3'- -AGaCGGUCCAACAUgUCGugGCuGCc -5'
10319 3' -54.3 NC_002687.1 + 58741 0.72 0.896772
Target:  5'- uUCUGCUuguugAGGUaGUACAGCAgcUCGGCGa -3'
miRNA:   3'- -AGACGG-----UCCAaCAUGUCGU--GGCUGCc -5'
10319 3' -54.3 NC_002687.1 + 61469 0.66 0.993569
Target:  5'- cUCUGCaAGGUgauuCAGaauuCCGACGGg -3'
miRNA:   3'- -AGACGgUCCAacauGUCgu--GGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 72549 0.68 0.971854
Target:  5'- aCUGCUcGGcggUGUGuCGGCGgCGGCGGc -3'
miRNA:   3'- aGACGGuCCa--ACAU-GUCGUgGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 84921 1.1 0.008225
Target:  5'- gUCUGCCAGGUUGUACAGCACCGACGGc -3'
miRNA:   3'- -AGACGGUCCAACAUGUCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 85886 0.68 0.981155
Target:  5'- --gGCCAcguGGUccUGCcGCGCCGGCGGg -3'
miRNA:   3'- agaCGGU---CCAacAUGuCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 97633 0.67 0.983069
Target:  5'- -gUGCCGGcaccgUGUcgGCGGUgacACCGACGGg -3'
miRNA:   3'- agACGGUCca---ACA--UGUCG---UGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 98176 0.67 0.983069
Target:  5'- -gUGCCAGcagUGccaGCGGUGCCGAUGGu -3'
miRNA:   3'- agACGGUCca-ACa--UGUCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 121713 0.66 0.99512
Target:  5'- --aGCCGaGagGUACGGCuuCGACGGg -3'
miRNA:   3'- agaCGGUcCaaCAUGUCGugGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 159885 0.66 0.991645
Target:  5'- --cGCCAGGc---GCAGcCACuCGGCGGg -3'
miRNA:   3'- agaCGGUCCaacaUGUC-GUG-GCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 195811 0.68 0.974439
Target:  5'- cUCcGCCAGGUUGUAgAGCuuCGuCGc -3'
miRNA:   3'- -AGaCGGUCCAACAUgUCGugGCuGCc -5'
10319 3' -54.3 NC_002687.1 + 203539 0.74 0.782
Target:  5'- -gUGCuCAGGUcGUAU-GCACCGGCGGc -3'
miRNA:   3'- agACG-GUCCAaCAUGuCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 204716 0.67 0.990987
Target:  5'- aCUgGCCAGGUUu--CAGCACCGcuguuugccgauuuCGGg -3'
miRNA:   3'- aGA-CGGUCCAAcauGUCGUGGCu-------------GCC- -5'
10319 3' -54.3 NC_002687.1 + 216226 0.71 0.908826
Target:  5'- gUUGCCccGGGUUGUGCAGUcuuucgguGCCGAUa- -3'
miRNA:   3'- aGACGG--UCCAACAUGUCG--------UGGCUGcc -5'
10319 3' -54.3 NC_002687.1 + 231692 0.66 0.991645
Target:  5'- cUCUGgaaauUCAuGGUgGUGgggaGGCACCGACGGg -3'
miRNA:   3'- -AGAC-----GGU-CCAaCAUg---UCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 242558 0.66 0.992657
Target:  5'- aUUUGUuccgCAGGUUGUcUAGCACUGGCu- -3'
miRNA:   3'- -AGACG----GUCCAACAuGUCGUGGCUGcc -5'
10319 3' -54.3 NC_002687.1 + 249813 0.67 0.984833
Target:  5'- cUUGCCAGGUUGcagACGGCAaucuccuccuUgGACGa -3'
miRNA:   3'- aGACGGUCCAACa--UGUCGU----------GgCUGCc -5'
10319 3' -54.3 NC_002687.1 + 250359 0.67 0.984833
Target:  5'- --cGCCu-GUUGUACAGCacgGCCGugGa -3'
miRNA:   3'- agaCGGucCAACAUGUCG---UGGCugCc -5'
10319 3' -54.3 NC_002687.1 + 257374 0.66 0.993569
Target:  5'- cUCggGCCAGuGUguaucggaggUGUGCAGCAUCGccGCGa -3'
miRNA:   3'- -AGa-CGGUC-CA----------ACAUGUCGUGGC--UGCc -5'
10319 3' -54.3 NC_002687.1 + 258231 0.67 0.984833
Target:  5'- -gUGCCGGG-UGUucuucggaaAGCACCGugGa -3'
miRNA:   3'- agACGGUCCaACAug-------UCGUGGCugCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.