miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10319 3' -54.3 NC_002687.1 + 280962 0.68 0.979082
Target:  5'- --gGCCuGGGUg--GCGGCAgCGGCGGc -3'
miRNA:   3'- agaCGG-UCCAacaUGUCGUgGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 19976 0.68 0.974439
Target:  5'- cUCcGCCAGGUUGUAgAGCuuCGuCGc -3'
miRNA:   3'- -AGaCGGUCCAACAUgUCGugGCuGCc -5'
10319 3' -54.3 NC_002687.1 + 72549 0.68 0.971854
Target:  5'- aCUGCUcGGcggUGUGuCGGCGgCGGCGGc -3'
miRNA:   3'- aGACGGuCCa--ACAU-GUCGUgGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 283139 0.69 0.965825
Target:  5'- aUCUGCUgcuuaccuugguGGGUUGUcccuucgGCAGCAuCCGaaGCGGc -3'
miRNA:   3'- -AGACGG------------UCCAACA-------UGUCGU-GGC--UGCC- -5'
10319 3' -54.3 NC_002687.1 + 290944 0.69 0.956082
Target:  5'- --aGUCAGGcggGcUACAGCACCGcguACGGg -3'
miRNA:   3'- agaCGGUCCaa-C-AUGUCGUGGC---UGCC- -5'
10319 3' -54.3 NC_002687.1 + 216226 0.71 0.908826
Target:  5'- gUUGCCccGGGUUGUGCAGUcuuucgguGCCGAUa- -3'
miRNA:   3'- aGACGG--UCCAACAUGUCG--------UGGCUGcc -5'
10319 3' -54.3 NC_002687.1 + 280927 0.74 0.80793
Target:  5'- -aUGCCGGGggcccgUGUugaaGCAGCGUCGGCGGg -3'
miRNA:   3'- agACGGUCCa-----ACA----UGUCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 231692 0.66 0.991645
Target:  5'- cUCUGgaaauUCAuGGUgGUGgggaGGCACCGACGGg -3'
miRNA:   3'- -AGAC-----GGU-CCAaCAUg---UCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 277131 0.66 0.991645
Target:  5'- --aGCCGGGUcGUccgAUGGcCGCCGACGa -3'
miRNA:   3'- agaCGGUCCAaCA---UGUC-GUGGCUGCc -5'
10319 3' -54.3 NC_002687.1 + 311063 0.67 0.986454
Target:  5'- -aUGUUuuGUUGUACAGCACUGAaauCGGc -3'
miRNA:   3'- agACGGucCAACAUGUCGUGGCU---GCC- -5'
10319 3' -54.3 NC_002687.1 + 97633 0.67 0.983069
Target:  5'- -gUGCCGGcaccgUGUcgGCGGUgacACCGACGGg -3'
miRNA:   3'- agACGGUCca---ACA--UGUCG---UGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 61469 0.66 0.993569
Target:  5'- cUCUGCaAGGUgauuCAGaauuCCGACGGg -3'
miRNA:   3'- -AGACGgUCCAacauGUCgu--GGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 258231 0.67 0.984833
Target:  5'- -gUGCCGGG-UGUucuucggaaAGCACCGugGa -3'
miRNA:   3'- agACGGUCCaACAug-------UCGUGGCugCc -5'
10319 3' -54.3 NC_002687.1 + 259812 0.66 0.991645
Target:  5'- --gGCCaAGGcgg-GCAGCGCCGACa- -3'
miRNA:   3'- agaCGG-UCCaacaUGUCGUGGCUGcc -5'
10319 3' -54.3 NC_002687.1 + 121713 0.66 0.99512
Target:  5'- --aGCCGaGagGUACGGCuuCGACGGg -3'
miRNA:   3'- agaCGGUcCaaCAUGUCGugGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 274859 0.67 0.984833
Target:  5'- aCUGCaaccgcaauGGacucucccuUUGUGCAGCACCcACGGg -3'
miRNA:   3'- aGACGgu-------CC---------AACAUGUCGUGGcUGCC- -5'
10319 3' -54.3 NC_002687.1 + 195811 0.68 0.974439
Target:  5'- cUCcGCCAGGUUGUAgAGCuuCGuCGc -3'
miRNA:   3'- -AGaCGGUCCAACAUgUCGugGCuGCc -5'
10319 3' -54.3 NC_002687.1 + 249813 0.67 0.984833
Target:  5'- cUUGCCAGGUUGcagACGGCAaucuccuccuUgGACGa -3'
miRNA:   3'- aGACGGUCCAACa--UGUCGU----------GgCUGCc -5'
10319 3' -54.3 NC_002687.1 + 84921 1.1 0.008225
Target:  5'- gUCUGCCAGGUUGUACAGCACCGACGGc -3'
miRNA:   3'- -AGACGGUCCAACAUGUCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 203539 0.74 0.782
Target:  5'- -gUGCuCAGGUcGUAU-GCACCGGCGGc -3'
miRNA:   3'- agACG-GUCCAaCAUGuCGUGGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.