miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10322 3' -56.3 NC_002687.1 + 9125 0.66 0.977524
Target:  5'- cCCGA-CCACgCAACGCCGuCAGCc- -3'
miRNA:   3'- uGGCUaGGUGgGUUGCGGUcGUUGca -5'
10322 3' -56.3 NC_002687.1 + 9582 0.68 0.938698
Target:  5'- uGCCGAUgUAgCCGAUGCgggccacaccuuuacCAGCGGCGUa -3'
miRNA:   3'- -UGGCUAgGUgGGUUGCG---------------GUCGUUGCA- -5'
10322 3' -56.3 NC_002687.1 + 12963 0.72 0.768605
Target:  5'- aGCCGAU-CACagAGCGCCGGCAACa- -3'
miRNA:   3'- -UGGCUAgGUGggUUGCGGUCGUUGca -5'
10322 3' -56.3 NC_002687.1 + 27560 0.66 0.979699
Target:  5'- cUCGcgCCGCUCAGCGaCCgugucgggGGCGACGa -3'
miRNA:   3'- uGGCuaGGUGGGUUGC-GG--------UCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 30720 0.66 0.969971
Target:  5'- uACauAUCUACCCGuACGCCAacuGCGACGc -3'
miRNA:   3'- -UGgcUAGGUGGGU-UGCGGU---CGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 36202 0.68 0.945672
Target:  5'- gGCCucgCCACCCGugGgCAGUGugGUu -3'
miRNA:   3'- -UGGcuaGGUGGGUugCgGUCGUugCA- -5'
10322 3' -56.3 NC_002687.1 + 61016 0.71 0.843908
Target:  5'- uGCCuGAUCCACCUGAa--CGGCAACGg -3'
miRNA:   3'- -UGG-CUAGGUGGGUUgcgGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 63983 0.66 0.977524
Target:  5'- cACCGAUCCACauguCGACGUaCGGCu-CGa -3'
miRNA:   3'- -UGGCUAGGUGg---GUUGCG-GUCGuuGCa -5'
10322 3' -56.3 NC_002687.1 + 72641 0.73 0.703614
Target:  5'- cGCCGAUagaUCGCUCAAUGUCAGCGGCa- -3'
miRNA:   3'- -UGGCUA---GGUGGGUUGCGGUCGUUGca -5'
10322 3' -56.3 NC_002687.1 + 77492 0.72 0.786302
Target:  5'- ---uGUCgACCCGACGCCcGCAACGUu -3'
miRNA:   3'- uggcUAGgUGGGUUGCGGuCGUUGCA- -5'
10322 3' -56.3 NC_002687.1 + 81203 0.68 0.945672
Target:  5'- cUCGGgcaCCGCU--ACGCCGGCAACGg -3'
miRNA:   3'- uGGCUa--GGUGGguUGCGGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 84903 0.67 0.953628
Target:  5'- cACCGA-CgGCacgaCGAUGCCGGUGACGUc -3'
miRNA:   3'- -UGGCUaGgUGg---GUUGCGGUCGUUGCA- -5'
10322 3' -56.3 NC_002687.1 + 85886 0.68 0.936868
Target:  5'- gGCCacguGGUCCugCC-GCGCCGGCGggaccaGCGg -3'
miRNA:   3'- -UGG----CUAGGugGGuUGCGGUCGU------UGCa -5'
10322 3' -56.3 NC_002687.1 + 88567 0.68 0.941377
Target:  5'- cGCCGAacucgCgGCCC-GCGCCAGCG-CGc -3'
miRNA:   3'- -UGGCUa----GgUGGGuUGCGGUCGUuGCa -5'
10322 3' -56.3 NC_002687.1 + 88677 1.06 0.009046
Target:  5'- aACCGAUCCACCCAACGCCAGCAACGUu -3'
miRNA:   3'- -UGGCUAGGUGGGUUGCGGUCGUUGCA- -5'
10322 3' -56.3 NC_002687.1 + 95124 0.69 0.916675
Target:  5'- cCCGAUCCACCCu-CGCgCAGau-CGg -3'
miRNA:   3'- uGGCUAGGUGGGuuGCG-GUCguuGCa -5'
10322 3' -56.3 NC_002687.1 + 98148 0.66 0.972666
Target:  5'- uGCCGGUggugCCAgcggugCCAGCgguGCCAGCAACGa -3'
miRNA:   3'- -UGGCUA----GGUg-----GGUUG---CGGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 100664 0.73 0.741253
Target:  5'- cACCGGUgCCGCCUucacCGUCGGCGACGc -3'
miRNA:   3'- -UGGCUA-GGUGGGuu--GCGGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 114592 0.66 0.977524
Target:  5'- uACCGAcgCugUCAGCGCCAGUGAUc- -3'
miRNA:   3'- -UGGCUagGugGGUUGCGGUCGUUGca -5'
10322 3' -56.3 NC_002687.1 + 135826 0.67 0.955119
Target:  5'- cACCGAUCaCggguguguggacaacGCCgggaauCAugGCCGGCAACGa -3'
miRNA:   3'- -UGGCUAG-G---------------UGG------GUugCGGUCGUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.