Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10322 | 3' | -56.3 | NC_002687.1 | + | 100664 | 0.73 | 0.741253 |
Target: 5'- cACCGGUgCCGCCUucacCGUCGGCGACGc -3' miRNA: 3'- -UGGCUA-GGUGGGuu--GCGGUCGUUGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 226792 | 0.67 | 0.960758 |
Target: 5'- uGCCGGUgCCGgugCCggUGCCGGUGGCGg -3' miRNA: 3'- -UGGCUA-GGUg--GGuuGCGGUCGUUGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 88567 | 0.68 | 0.941377 |
Target: 5'- cGCCGAacucgCgGCCC-GCGCCAGCG-CGc -3' miRNA: 3'- -UGGCUa----GgUGGGuUGCGGUCGUuGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 332512 | 0.68 | 0.941377 |
Target: 5'- -gUGAUCCACCCuuuGCGgCuGCAGCa- -3' miRNA: 3'- ugGCUAGGUGGGu--UGCgGuCGUUGca -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 157287 | 0.69 | 0.893047 |
Target: 5'- cGCCGAcgaaaugaauUCgCACUCAACGCUAaCAGCGUg -3' miRNA: 3'- -UGGCU----------AG-GUGGGUUGCGGUcGUUGCA- -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 304799 | 0.7 | 0.866118 |
Target: 5'- cGCCGAaguacgUCCGCCCAaccgACGCCA-CAACu- -3' miRNA: 3'- -UGGCU------AGGUGGGU----UGCGGUcGUUGca -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 259540 | 0.66 | 0.979699 |
Target: 5'- -aCGAUCguguuGCgCGGCGCCGGCAACu- -3' miRNA: 3'- ugGCUAGg----UGgGUUGCGGUCGUUGca -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 63983 | 0.66 | 0.977524 |
Target: 5'- cACCGAUCCACauguCGACGUaCGGCu-CGa -3' miRNA: 3'- -UGGCUAGGUGg---GUUGCG-GUCGuuGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 269759 | 0.66 | 0.972666 |
Target: 5'- uCCGA-CCugCCuucACGCCAGUcACGc -3' miRNA: 3'- uGGCUaGGugGGu--UGCGGUCGuUGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 308413 | 0.67 | 0.957294 |
Target: 5'- uACCag-CCACCCGGCGaccCCGGCGggGCGg -3' miRNA: 3'- -UGGcuaGGUGGGUUGC---GGUCGU--UGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 9582 | 0.68 | 0.938698 |
Target: 5'- uGCCGAUgUAgCCGAUGCgggccacaccuuuacCAGCGGCGUa -3' miRNA: 3'- -UGGCUAgGUgGGUUGCG---------------GUCGUUGCA- -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 12963 | 0.72 | 0.768605 |
Target: 5'- aGCCGAU-CACagAGCGCCGGCAACa- -3' miRNA: 3'- -UGGCUAgGUGggUUGCGGUCGUUGca -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 114592 | 0.66 | 0.977524 |
Target: 5'- uACCGAcgCugUCAGCGCCAGUGAUc- -3' miRNA: 3'- -UGGCUagGugGGUUGCGGUCGUUGca -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 238308 | 0.71 | 0.811889 |
Target: 5'- uCCGAUCUcgGCCCGACGCUuGuCGGCGa -3' miRNA: 3'- uGGCUAGG--UGGGUUGCGGuC-GUUGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 81203 | 0.68 | 0.945672 |
Target: 5'- cUCGGgcaCCGCU--ACGCCGGCAACGg -3' miRNA: 3'- uGGCUa--GGUGGguUGCGGUCGUUGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 9125 | 0.66 | 0.977524 |
Target: 5'- cCCGA-CCACgCAACGCCGuCAGCc- -3' miRNA: 3'- uGGCUaGGUGgGUUGCGGUcGUUGca -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 61016 | 0.71 | 0.843908 |
Target: 5'- uGCCuGAUCCACCUGAa--CGGCAACGg -3' miRNA: 3'- -UGG-CUAGGUGGGUUgcgGUCGUUGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 161851 | 0.66 | 0.968842 |
Target: 5'- -aUGAUCCACCUuuuccgucacguCGCgCAGCAACGc -3' miRNA: 3'- ugGCUAGGUGGGuu----------GCG-GUCGUUGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 298428 | 0.69 | 0.911087 |
Target: 5'- cCCGGUCCAagCAcGCGCgCGGCGGCGg -3' miRNA: 3'- uGGCUAGGUggGU-UGCG-GUCGUUGCa -5' |
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10322 | 3' | -56.3 | NC_002687.1 | + | 95124 | 0.69 | 0.916675 |
Target: 5'- cCCGAUCCACCCu-CGCgCAGau-CGg -3' miRNA: 3'- uGGCUAGGUGGGuuGCG-GUCguuGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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