Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 10342 | 3' | -55 | NC_002687.1 | + | 110672 | 0.67 | 0.985644 |
|
Target: 5'- uGGGAGaACCUGGuuucgagGACcAG-UGCGCCCg -3' miRNA: 3'- -UCCUCaUGGGCC-------UUGaUCuGCGUGGG- -5' |
|||||||
| 10342 | 3' | -55 | NC_002687.1 | + | 226150 | 0.67 | 0.985804 |
|
Target: 5'- uGGAGUAUCguggGGAGgaGGAUGCACUa -3' miRNA: 3'- uCCUCAUGGg---CCUUgaUCUGCGUGGg -5' |
|||||||
| 10342 | 3' | -55 | NC_002687.1 | + | 308424 | 0.67 | 0.985804 |
|
Target: 5'- cGGcg-ACCCcggcGGGGC-GGGCGCGCCCc -3' miRNA: 3'- uCCucaUGGG----CCUUGaUCUGCGUGGG- -5' |
|||||||
| 10342 | 3' | -55 | NC_002687.1 | + | 134047 | 0.66 | 0.988732 |
|
Target: 5'- aAGGAGUuaCCGGAAaaaccGCGCGCUCu -3' miRNA: 3'- -UCCUCAugGGCCUUgauc-UGCGUGGG- -5' |
|||||||
| 10342 | 3' | -55 | NC_002687.1 | + | 180047 | 0.66 | 0.988732 |
|
Target: 5'- gAGGAc-GCCgGGggUggguuUGGACGUACCUg -3' miRNA: 3'- -UCCUcaUGGgCCuuG-----AUCUGCGUGGG- -5' |
|||||||
| 10342 | 3' | -55 | NC_002687.1 | + | 262382 | 0.66 | 0.988732 |
|
Target: 5'- -cGAGUACgCGacGAACggcGGACGCuACCCu -3' miRNA: 3'- ucCUCAUGgGC--CUUGa--UCUGCG-UGGG- -5' |
|||||||
| 10342 | 3' | -55 | NC_002687.1 | + | 211352 | 0.66 | 0.990007 |
|
Target: 5'- cGGAGagcgcggcUGCCCGGAcucgacuggcgACUAcGACGUcgugcuuccggaACCCg -3' miRNA: 3'- uCCUC--------AUGGGCCU-----------UGAU-CUGCG------------UGGG- -5' |
|||||||
| 10342 | 3' | -55 | NC_002687.1 | + | 215924 | 0.66 | 0.991167 |
|
Target: 5'- uAGGAa----CGGAugUGGugGCACCg -3' miRNA: 3'- -UCCUcauggGCCUugAUCugCGUGGg -5' |
|||||||
| 10342 | 3' | -55 | NC_002687.1 | + | 243110 | 0.66 | 0.992218 |
|
Target: 5'- cAGGAGUaauGCCCGcGAGCau--CGguCCCu -3' miRNA: 3'- -UCCUCA---UGGGC-CUUGaucuGCguGGG- -5' |
|||||||
| 10342 | 3' | -55 | NC_002687.1 | + | 171724 | 0.65 | 0.993167 |
|
Target: 5'- uGGAG-ACCuUGGAGCUGGACG-ACg- -3' miRNA: 3'- uCCUCaUGG-GCCUUGAUCUGCgUGgg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home