Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10342 | 3' | -55 | NC_002687.1 | + | 232654 | 0.7 | 0.913053 |
Target: 5'- cGGcGAGUGCCaCGuGAACaUGGACGCggACCUu -3' miRNA: 3'- -UC-CUCAUGG-GC-CUUG-AUCUGCG--UGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 243110 | 0.66 | 0.992218 |
Target: 5'- cAGGAGUaauGCCCGcGAGCau--CGguCCCu -3' miRNA: 3'- -UCCUCA---UGGGC-CUUGaucuGCguGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 244127 | 0.67 | 0.978245 |
Target: 5'- aAGGuGGUGCCCGGGcaaACUucguaguugGGACGCuuacgGCCg -3' miRNA: 3'- -UCC-UCAUGGGCCU---UGA---------UCUGCG-----UGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 262382 | 0.66 | 0.988732 |
Target: 5'- -cGAGUACgCGacGAACggcGGACGCuACCCu -3' miRNA: 3'- ucCUCAUGgGC--CUUGa--UCUGCG-UGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 264676 | 0.7 | 0.938427 |
Target: 5'- gAGGGGUGCCucguuucuaCGGAGCUguugacaaAGACGUcgGCCa -3' miRNA: 3'- -UCCUCAUGG---------GCCUUGA--------UCUGCG--UGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 290970 | 0.68 | 0.970601 |
Target: 5'- cGGGGUcUCCGGAucACUuaugacaAGGCGCGCgCa -3' miRNA: 3'- uCCUCAuGGGCCU--UGA-------UCUGCGUGgG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 301173 | 0.73 | 0.83113 |
Target: 5'- uGGGGuUGCCCgGGGACgcaucuuGACGgGCCCa -3' miRNA: 3'- uCCUC-AUGGG-CCUUGau-----CUGCgUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 308424 | 0.67 | 0.985804 |
Target: 5'- cGGcg-ACCCcggcGGGGC-GGGCGCGCCCc -3' miRNA: 3'- uCCucaUGGG----CCUUGaUCUGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 308802 | 0.71 | 0.901402 |
Target: 5'- cGGucucaCCGGGAggGGGCGCGCCCg -3' miRNA: 3'- uCCucaugGGCCUUgaUCUGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 330779 | 0.68 | 0.970874 |
Target: 5'- gGGGAGaAUCgGGGACcGGACGCGgCa -3' miRNA: 3'- -UCCUCaUGGgCCUUGaUCUGCGUgGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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