miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10342 3' -55 NC_002687.1 + 8271 0.67 0.982327
Target:  5'- uGGAGUACCUauGGcgcAGCUgucGGAUGCugCUg -3'
miRNA:   3'- uCCUCAUGGG--CC---UUGA---UCUGCGugGG- -5'
10342 3' -55 NC_002687.1 + 11175 0.68 0.96835
Target:  5'- cGGGGGUGCaaauguggcaCCGGGACgggcgagccaaggagGuuuuggccaaGACGCACCCg -3'
miRNA:   3'- -UCCUCAUG----------GGCCUUGa--------------U----------CUGCGUGGG- -5'
10342 3' -55 NC_002687.1 + 39258 0.68 0.961863
Target:  5'- aGGaGAGUAUCCGGcauCgauuCGCGCCCa -3'
miRNA:   3'- -UC-CUCAUGGGCCuu-GaucuGCGUGGG- -5'
10342 3' -55 NC_002687.1 + 58168 0.68 0.961863
Target:  5'- aAGGAgcaaccGUugCCGGGGC-AGAUGCaaaccACCCu -3'
miRNA:   3'- -UCCU------CAugGGCCUUGaUCUGCG-----UGGG- -5'
10342 3' -55 NC_002687.1 + 110672 0.67 0.985644
Target:  5'- uGGGAGaACCUGGuuucgagGACcAG-UGCGCCCg -3'
miRNA:   3'- -UCCUCaUGGGCC-------UUGaUCuGCGUGGG- -5'
10342 3' -55 NC_002687.1 + 120945 0.76 0.64949
Target:  5'- gGGGuGGUugCUGGGGCUGGuaucCGUACCCg -3'
miRNA:   3'- -UCC-UCAugGGCCUUGAUCu---GCGUGGG- -5'
10342 3' -55 NC_002687.1 + 126256 0.76 0.678538
Target:  5'- cAGGcucGGUGCCCGGAACauugccGGAUGCACUg -3'
miRNA:   3'- -UCC---UCAUGGGCCUUGa-----UCUGCGUGGg -5'
10342 3' -55 NC_002687.1 + 134047 0.66 0.988732
Target:  5'- aAGGAGUuaCCGGAAaaaccGCGCGCUCu -3'
miRNA:   3'- -UCCUCAugGGCCUUgauc-UGCGUGGG- -5'
10342 3' -55 NC_002687.1 + 146920 1.13 0.005292
Target:  5'- cAGGAGUACCCGGAACUAGACGCACCCa -3'
miRNA:   3'- -UCCUCAUGGGCCUUGAUCUGCGUGGG- -5'
10342 3' -55 NC_002687.1 + 151781 0.68 0.975961
Target:  5'- uGGGAgacuuGUGCUCGGGGCUuucGACaggGCACCg -3'
miRNA:   3'- -UCCU-----CAUGGGCCUUGAu--CUG---CGUGGg -5'
10342 3' -55 NC_002687.1 + 154877 0.72 0.860786
Target:  5'- uGGA--ACCCGGAgaggacgcagaagACgcagcAGACGCACCCu -3'
miRNA:   3'- uCCUcaUGGGCCU-------------UGa----UCUGCGUGGG- -5'
10342 3' -55 NC_002687.1 + 171724 0.65 0.993167
Target:  5'- uGGAG-ACCuUGGAGCUGGACG-ACg- -3'
miRNA:   3'- uCCUCaUGG-GCCUUGAUCUGCgUGgg -5'
10342 3' -55 NC_002687.1 + 180047 0.66 0.988732
Target:  5'- gAGGAc-GCCgGGggUggguuUGGACGUACCUg -3'
miRNA:   3'- -UCCUcaUGGgCCuuG-----AUCUGCGUGGG- -5'
10342 3' -55 NC_002687.1 + 181684 0.73 0.823111
Target:  5'- -cGAGUGCCgaUGcGAugUGGACGCGCUCa -3'
miRNA:   3'- ucCUCAUGG--GC-CUugAUCUGCGUGGG- -5'
10342 3' -55 NC_002687.1 + 204395 0.68 0.96806
Target:  5'- uGGGuGUAgUCGGAAUacgAGGCGUuCCCa -3'
miRNA:   3'- -UCCuCAUgGGCCUUGa--UCUGCGuGGG- -5'
10342 3' -55 NC_002687.1 + 211352 0.66 0.990007
Target:  5'- cGGAGagcgcggcUGCCCGGAcucgacuggcgACUAcGACGUcgugcuuccggaACCCg -3'
miRNA:   3'- uCCUC--------AUGGGCCU-----------UGAU-CUGCG------------UGGG- -5'
10342 3' -55 NC_002687.1 + 215924 0.66 0.991167
Target:  5'- uAGGAa----CGGAugUGGugGCACCg -3'
miRNA:   3'- -UCCUcauggGCCUugAUCugCGUGGg -5'
10342 3' -55 NC_002687.1 + 225778 0.7 0.928924
Target:  5'- uGGAGUAUCguggGGAGgaGGAUGCACCa -3'
miRNA:   3'- uCCUCAUGGg---CCUUgaUCUGCGUGGg -5'
10342 3' -55 NC_002687.1 + 225964 0.7 0.928924
Target:  5'- uGGAGUAUCguggGGAGgaGGAUGCACCa -3'
miRNA:   3'- uCCUCAUGGg---CCUUgaUCUGCGUGGg -5'
10342 3' -55 NC_002687.1 + 226150 0.67 0.985804
Target:  5'- uGGAGUAUCguggGGAGgaGGAUGCACUa -3'
miRNA:   3'- uCCUCAUGGg---CCUUgaUCUGCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.