Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10342 | 3' | -55 | NC_002687.1 | + | 225964 | 0.7 | 0.928924 |
Target: 5'- uGGAGUAUCguggGGAGgaGGAUGCACCa -3' miRNA: 3'- uCCUCAUGGg---CCUUgaUCUGCGUGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 301173 | 0.73 | 0.83113 |
Target: 5'- uGGGGuUGCCCgGGGACgcaucuuGACGgGCCCa -3' miRNA: 3'- uCCUC-AUGGG-CCUUGau-----CUGCgUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 126256 | 0.76 | 0.678538 |
Target: 5'- cAGGcucGGUGCCCGGAACauugccGGAUGCACUg -3' miRNA: 3'- -UCC---UCAUGGGCCUUGa-----UCUGCGUGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 308424 | 0.67 | 0.985804 |
Target: 5'- cGGcg-ACCCcggcGGGGC-GGGCGCGCCCc -3' miRNA: 3'- uCCucaUGGG----CCUUGaUCUGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 110672 | 0.67 | 0.985644 |
Target: 5'- uGGGAGaACCUGGuuucgagGACcAG-UGCGCCCg -3' miRNA: 3'- -UCCUCaUGGGCC-------UUGaUCuGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 8271 | 0.67 | 0.982327 |
Target: 5'- uGGAGUACCUauGGcgcAGCUgucGGAUGCugCUg -3' miRNA: 3'- uCCUCAUGGG--CC---UUGA---UCUGCGugGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 225778 | 0.7 | 0.928924 |
Target: 5'- uGGAGUAUCguggGGAGgaGGAUGCACCa -3' miRNA: 3'- uCCUCAUGGg---CCUUgaUCUGCGUGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 226150 | 0.67 | 0.985804 |
Target: 5'- uGGAGUAUCguggGGAGgaGGAUGCACUa -3' miRNA: 3'- uCCUCAUGGg---CCUUgaUCUGCGUGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 330779 | 0.68 | 0.970874 |
Target: 5'- gGGGAGaAUCgGGGACcGGACGCGgCa -3' miRNA: 3'- -UCCUCaUGGgCCUUGaUCUGCGUgGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 204395 | 0.68 | 0.96806 |
Target: 5'- uGGGuGUAgUCGGAAUacgAGGCGUuCCCa -3' miRNA: 3'- -UCCuCAUgGGCCUUGa--UCUGCGuGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 290970 | 0.68 | 0.970601 |
Target: 5'- cGGGGUcUCCGGAucACUuaugacaAGGCGCGCgCa -3' miRNA: 3'- uCCUCAuGGGCCU--UGA-------UCUGCGUGgG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 134047 | 0.66 | 0.988732 |
Target: 5'- aAGGAGUuaCCGGAAaaaccGCGCGCUCu -3' miRNA: 3'- -UCCUCAugGGCCUUgauc-UGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 215924 | 0.66 | 0.991167 |
Target: 5'- uAGGAa----CGGAugUGGugGCACCg -3' miRNA: 3'- -UCCUcauggGCCUugAUCugCGUGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 180047 | 0.66 | 0.988732 |
Target: 5'- gAGGAc-GCCgGGggUggguuUGGACGUACCUg -3' miRNA: 3'- -UCCUcaUGGgCCuuG-----AUCUGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 154877 | 0.72 | 0.860786 |
Target: 5'- uGGA--ACCCGGAgaggacgcagaagACgcagcAGACGCACCCu -3' miRNA: 3'- uCCUcaUGGGCCU-------------UGa----UCUGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 308802 | 0.71 | 0.901402 |
Target: 5'- cGGucucaCCGGGAggGGGCGCGCCCg -3' miRNA: 3'- uCCucaugGGCCUUgaUCUGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 232654 | 0.7 | 0.913053 |
Target: 5'- cGGcGAGUGCCaCGuGAACaUGGACGCggACCUu -3' miRNA: 3'- -UC-CUCAUGG-GC-CUUG-AUCUGCG--UGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 264676 | 0.7 | 0.938427 |
Target: 5'- gAGGGGUGCCucguuucuaCGGAGCUguugacaaAGACGUcgGCCa -3' miRNA: 3'- -UCCUCAUGG---------GCCUUGA--------UCUGCG--UGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 244127 | 0.67 | 0.978245 |
Target: 5'- aAGGuGGUGCCCGGGcaaACUucguaguugGGACGCuuacgGCCg -3' miRNA: 3'- -UCC-UCAUGGGCCU---UGA---------UCUGCG-----UGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 39258 | 0.68 | 0.961863 |
Target: 5'- aGGaGAGUAUCCGGcauCgauuCGCGCCCa -3' miRNA: 3'- -UC-CUCAUGGGCCuu-GaucuGCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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