Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10342 | 5' | -51.8 | NC_002687.1 | + | 262047 | 0.66 | 0.999119 |
Target: 5'- gACGAACAucGCAGACUGAG-GgGCaUCGa -3' miRNA: 3'- -UGUUUGUu-CGUUUGGCUCaCgCG-GGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 144802 | 0.67 | 0.995909 |
Target: 5'- uGCGAACGgagagGGUaAGACCGugGGUGgGCCCa -3' miRNA: 3'- -UGUUUGU-----UCG-UUUGGC--UCACgCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 45134 | 0.67 | 0.996997 |
Target: 5'- gGCGAGCucguGGuCAAGUCGGGUGUGCuuGa -3' miRNA: 3'- -UGUUUGu---UC-GUUUGGCUCACGCGggC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 146162 | 0.67 | 0.99736 |
Target: 5'- cACGAGCAGGCGcgcguccauguCCGAG-GCGgCCa -3' miRNA: 3'- -UGUUUGUUCGUuu---------GGCUCaCGCgGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 45338 | 0.66 | 0.998719 |
Target: 5'- -gAGGCAGGCAG--CGGGacGCGCCCa -3' miRNA: 3'- ugUUUGUUCGUUugGCUCa-CGCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 97216 | 0.66 | 0.998719 |
Target: 5'- -gAGAUucGC-GACCGGG-GCGUCCGg -3' miRNA: 3'- ugUUUGuuCGuUUGGCUCaCGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 77546 | 0.66 | 0.999102 |
Target: 5'- gAUGAugAAGUAcACCGAauucgaaGUGUGCUCGg -3' miRNA: 3'- -UGUUugUUCGUuUGGCU-------CACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 209740 | 0.66 | 0.999275 |
Target: 5'- -aGAACGAGgAAuauccucgaCGGGUGUGCCCu -3' miRNA: 3'- ugUUUGUUCgUUug-------GCUCACGCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 301950 | 0.67 | 0.995909 |
Target: 5'- -aGAACAGuCAAACagaGAGUGCucGCCCGc -3' miRNA: 3'- ugUUUGUUcGUUUGg--CUCACG--CGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 234749 | 0.68 | 0.995324 |
Target: 5'- cGCAAGCGAGCucgggcuuccauguGcucguggcguuucuuGGCCGAGUGgGCCUu -3' miRNA: 3'- -UGUUUGUUCG--------------U---------------UUGGCUCACgCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 305378 | 0.69 | 0.986414 |
Target: 5'- gGCAAaggGCAAGCAGACCGAaucCGCCa- -3' miRNA: 3'- -UGUU---UGUUCGUUUGGCUcacGCGGgc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 49930 | 0.69 | 0.986414 |
Target: 5'- uGC-AACAAGUuGGCaGAGUGUGCCUGu -3' miRNA: 3'- -UGuUUGUUCGuUUGgCUCACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 50816 | 0.69 | 0.986414 |
Target: 5'- uGC-AACAAGUuGGCaGAGUGUGCCUGu -3' miRNA: 3'- -UGuUUGUUCGuUUGgCUCACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 210682 | 0.74 | 0.898837 |
Target: 5'- aGCGGGCGAGCGccagAACgcaGAGgucgGCGCCCGu -3' miRNA: 3'- -UGUUUGUUCGU----UUGg--CUCa---CGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 80226 | 0.74 | 0.871717 |
Target: 5'- gGCAAACuga-GAACCGAGUGUGCCa- -3' miRNA: 3'- -UGUUUGuucgUUUGGCUCACGCGGgc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 146886 | 1.1 | 0.013279 |
Target: 5'- aACAAACAAGCAAACCGAGUGCGCCCGg -3' miRNA: 3'- -UGUUUGUUCGUUUGGCUCACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 238670 | 0.69 | 0.990351 |
Target: 5'- cGCcGACAAGCGucgGGCCGAGaucggagccaggGUGCCCu -3' miRNA: 3'- -UGuUUGUUCGU---UUGGCUCa-----------CGCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 151451 | 0.72 | 0.937629 |
Target: 5'- --cGACAAGCccgugugcgaaGAACgGAGUGUGCCUGg -3' miRNA: 3'- uguUUGUUCG-----------UUUGgCUCACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 139442 | 0.69 | 0.990594 |
Target: 5'- gACAAcguCAAcGCAuGCCGGGUGCgGUCCa -3' miRNA: 3'- -UGUUu--GUU-CGUuUGGCUCACG-CGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 307429 | 0.69 | 0.990594 |
Target: 5'- cGCAGGgAuacGGC--GCCGcGUGCGCCCa -3' miRNA: 3'- -UGUUUgU---UCGuuUGGCuCACGCGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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