miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10342 5' -51.8 NC_002687.1 + 4565 0.76 0.807915
Target:  5'- aACAAAuCAAGCcuGCCGAGcucUGaCGCCCGg -3'
miRNA:   3'- -UGUUU-GUUCGuuUGGCUC---AC-GCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 101931 0.66 0.998915
Target:  5'- gUAAACGcGCucGCCGAGUGUcacaugcgacaucGCCCu -3'
miRNA:   3'- uGUUUGUuCGuuUGGCUCACG-------------CGGGc -5'
10342 5' -51.8 NC_002687.1 + 105382 0.66 0.999119
Target:  5'- -aGAGCGAGgAAACCGGGcaGUGCUCc -3'
miRNA:   3'- ugUUUGUUCgUUUGGCUCa-CGCGGGc -5'
10342 5' -51.8 NC_002687.1 + 170369 0.66 0.999275
Target:  5'- cACGAACcgGGGCAcgAACCGGGgcacgaaccgGCGCgCGa -3'
miRNA:   3'- -UGUUUG--UUCGU--UUGGCUCa---------CGCGgGC- -5'
10342 5' -51.8 NC_002687.1 + 329760 0.69 0.986414
Target:  5'- uGCGAACAcgaucgcuGCugcGCCGAGgcGUGCCCGg -3'
miRNA:   3'- -UGUUUGUu-------CGuu-UGGCUCa-CGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 146675 0.69 0.990594
Target:  5'- gGCGAGUggGUAGACCGucGGUGgGUCCa -3'
miRNA:   3'- -UGUUUGuuCGUUUGGC--UCACgCGGGc -5'
10342 5' -51.8 NC_002687.1 + 41383 0.68 0.994517
Target:  5'- cGCGAGCc-GCAAGCCGugucgauguuGGUGUGCCg- -3'
miRNA:   3'- -UGUUUGuuCGUUUGGC----------UCACGCGGgc -5'
10342 5' -51.8 NC_002687.1 + 202298 0.68 0.994517
Target:  5'- uACAAccGCGucGCGGACCGGGgggaagaacaGCGCCUGa -3'
miRNA:   3'- -UGUU--UGUu-CGUUUGGCUCa---------CGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 144802 0.67 0.995909
Target:  5'- uGCGAACGgagagGGUaAGACCGugGGUGgGCCCa -3'
miRNA:   3'- -UGUUUGU-----UCG-UUUGGC--UCACgCGGGc -5'
10342 5' -51.8 NC_002687.1 + 235116 0.67 0.997834
Target:  5'- cGCGAAgAAGCAGGCCGAGgaguuggaUGCaaucgagaaaGCUCGc -3'
miRNA:   3'- -UGUUUgUUCGUUUGGCUC--------ACG----------CGGGC- -5'
10342 5' -51.8 NC_002687.1 + 87380 0.67 0.996322
Target:  5'- cCAGACcgcuuGAGCAGcccgucuaccagagGCCGAGUcaGCaGCCCGg -3'
miRNA:   3'- uGUUUG-----UUCGUU--------------UGGCUCA--CG-CGGGC- -5'
10342 5' -51.8 NC_002687.1 + 35784 0.68 0.994823
Target:  5'- aGCAAGCgAGGCAAaguGuagcuuagcguacauCCGAGUGCGCgCCc -3'
miRNA:   3'- -UGUUUG-UUCGUU---U---------------GGCUCACGCG-GGc -5'
10342 5' -51.8 NC_002687.1 + 277121 0.72 0.946642
Target:  5'- uUAGACu-GCAAGCCGGGU-CGUCCGa -3'
miRNA:   3'- uGUUUGuuCGUUUGGCUCAcGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 318012 0.67 0.996488
Target:  5'- gACAugGACGAcuGC--ACCGAGUGC-CCCGu -3'
miRNA:   3'- -UGU--UUGUU--CGuuUGGCUCACGcGGGC- -5'
10342 5' -51.8 NC_002687.1 + 155230 0.7 0.973953
Target:  5'- -uGAACcGGCAGGCgGAGuUGUGCUCGg -3'
miRNA:   3'- ugUUUGuUCGUUUGgCUC-ACGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 202735 0.68 0.994517
Target:  5'- uACAAccGCGucGCGGACCGGGgggaagaacaGCGCCUGa -3'
miRNA:   3'- -UGUU--UGUu-CGUUUGGCUCa---------CGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 234681 0.67 0.996997
Target:  5'- -aAAugAGGaCAGGCCGA-UGaCGCCCGa -3'
miRNA:   3'- ugUUugUUC-GUUUGGCUcAC-GCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 245722 0.66 0.999119
Target:  5'- uCAAACGuu---GCCGAGgagGCGUCCGa -3'
miRNA:   3'- uGUUUGUucguuUGGCUCa--CGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 154472 0.7 0.980935
Target:  5'- aACGGACGAGguuCGAACCGAagggguacaggGUGCGUCUGc -3'
miRNA:   3'- -UGUUUGUUC---GUUUGGCU-----------CACGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 168523 0.68 0.991736
Target:  5'- aGCAAACAGGCGAAUCGGuacUGCGaacugguaCCGu -3'
miRNA:   3'- -UGUUUGUUCGUUUGGCUc--ACGCg-------GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.