Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10342 | 5' | -51.8 | NC_002687.1 | + | 4565 | 0.76 | 0.807915 |
Target: 5'- aACAAAuCAAGCcuGCCGAGcucUGaCGCCCGg -3' miRNA: 3'- -UGUUU-GUUCGuuUGGCUC---AC-GCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 35784 | 0.68 | 0.994823 |
Target: 5'- aGCAAGCgAGGCAAaguGuagcuuagcguacauCCGAGUGCGCgCCc -3' miRNA: 3'- -UGUUUG-UUCGUU---U---------------GGCUCACGCG-GGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 41383 | 0.68 | 0.994517 |
Target: 5'- cGCGAGCc-GCAAGCCGugucgauguuGGUGUGCCg- -3' miRNA: 3'- -UGUUUGuuCGUUUGGC----------UCACGCGGgc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 45134 | 0.67 | 0.996997 |
Target: 5'- gGCGAGCucguGGuCAAGUCGGGUGUGCuuGa -3' miRNA: 3'- -UGUUUGu---UC-GUUUGGCUCACGCGggC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 45338 | 0.66 | 0.998719 |
Target: 5'- -gAGGCAGGCAG--CGGGacGCGCCCa -3' miRNA: 3'- ugUUUGUUCGUUugGCUCa-CGCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 49930 | 0.69 | 0.986414 |
Target: 5'- uGC-AACAAGUuGGCaGAGUGUGCCUGu -3' miRNA: 3'- -UGuUUGUUCGuUUGgCUCACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 50816 | 0.69 | 0.986414 |
Target: 5'- uGC-AACAAGUuGGCaGAGUGUGCCUGu -3' miRNA: 3'- -UGuUUGUUCGuUUGgCUCACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 55572 | 0.69 | 0.987941 |
Target: 5'- gACGAACAguagucgauGGCcuuGGCCGGGUugGUGCCUGg -3' miRNA: 3'- -UGUUUGU---------UCGu--UUGGCUCA--CGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 57214 | 0.66 | 0.998719 |
Target: 5'- cACGcGCAGGCGAuGCUGAGUGUuggGUUCGa -3' miRNA: 3'- -UGUuUGUUCGUU-UGGCUCACG---CGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 77546 | 0.66 | 0.999102 |
Target: 5'- gAUGAugAAGUAcACCGAauucgaaGUGUGCUCGg -3' miRNA: 3'- -UGUUugUUCGUuUGGCU-------CACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 80226 | 0.74 | 0.871717 |
Target: 5'- gGCAAACuga-GAACCGAGUGUGCCa- -3' miRNA: 3'- -UGUUUGuucgUUUGGCUCACGCGGgc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 87380 | 0.67 | 0.996322 |
Target: 5'- cCAGACcgcuuGAGCAGcccgucuaccagagGCCGAGUcaGCaGCCCGg -3' miRNA: 3'- uGUUUG-----UUCGUU--------------UGGCUCA--CG-CGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 97216 | 0.66 | 0.998719 |
Target: 5'- -gAGAUucGC-GACCGGG-GCGUCCGg -3' miRNA: 3'- ugUUUGuuCGuUUGGCUCaCGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 101931 | 0.66 | 0.998915 |
Target: 5'- gUAAACGcGCucGCCGAGUGUcacaugcgacaucGCCCu -3' miRNA: 3'- uGUUUGUuCGuuUGGCUCACG-------------CGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 105382 | 0.66 | 0.999119 |
Target: 5'- -aGAGCGAGgAAACCGGGcaGUGCUCc -3' miRNA: 3'- ugUUUGUUCgUUUGGCUCa-CGCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 139442 | 0.69 | 0.990594 |
Target: 5'- gACAAcguCAAcGCAuGCCGGGUGCgGUCCa -3' miRNA: 3'- -UGUUu--GUU-CGUuUGGCUCACG-CGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 144802 | 0.67 | 0.995909 |
Target: 5'- uGCGAACGgagagGGUaAGACCGugGGUGgGCCCa -3' miRNA: 3'- -UGUUUGU-----UCG-UUUGGC--UCACgCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 145851 | 0.66 | 0.999275 |
Target: 5'- cGCGAACuugccgaucuGCucGCCGAGgcGCGCgCCGg -3' miRNA: 3'- -UGUUUGuu--------CGuuUGGCUCa-CGCG-GGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 146162 | 0.67 | 0.99736 |
Target: 5'- cACGAGCAGGCGcgcguccauguCCGAG-GCGgCCa -3' miRNA: 3'- -UGUUUGUUCGUuu---------GGCUCaCGCgGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 146675 | 0.69 | 0.990594 |
Target: 5'- gGCGAGUggGUAGACCGucGGUGgGUCCa -3' miRNA: 3'- -UGUUUGuuCGUUUGGC--UCACgCGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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