miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10342 5' -51.8 NC_002687.1 + 146886 1.1 0.013279
Target:  5'- aACAAACAAGCAAACCGAGUGCGCCCGg -3'
miRNA:   3'- -UGUUUGUUCGUUUGGCUCACGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 4565 0.76 0.807915
Target:  5'- aACAAAuCAAGCcuGCCGAGcucUGaCGCCCGg -3'
miRNA:   3'- -UGUUU-GUUCGuuUGGCUC---AC-GCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 80226 0.74 0.871717
Target:  5'- gGCAAACuga-GAACCGAGUGUGCCa- -3'
miRNA:   3'- -UGUUUGuucgUUUGGCUCACGCGGgc -5'
10342 5' -51.8 NC_002687.1 + 210682 0.74 0.898837
Target:  5'- aGCGGGCGAGCGccagAACgcaGAGgucgGCGCCCGu -3'
miRNA:   3'- -UGUUUGUUCGU----UUGg--CUCa---CGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 151451 0.72 0.937629
Target:  5'- --cGACAAGCccgugugcgaaGAACgGAGUGUGCCUGg -3'
miRNA:   3'- uguUUGUUCG-----------UUUGgCUCACGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 277121 0.72 0.946642
Target:  5'- uUAGACu-GCAAGCCGGGU-CGUCCGa -3'
miRNA:   3'- uGUUUGuuCGUUUGGCUCAcGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 155230 0.7 0.973953
Target:  5'- -uGAACcGGCAGGCgGAGuUGUGCUCGg -3'
miRNA:   3'- ugUUUGuUCGUUUGgCUC-ACGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 154472 0.7 0.980935
Target:  5'- aACGGACGAGguuCGAACCGAagggguacaggGUGCGUCUGc -3'
miRNA:   3'- -UGUUUGUUC---GUUUGGCU-----------CACGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 50816 0.69 0.986414
Target:  5'- uGC-AACAAGUuGGCaGAGUGUGCCUGu -3'
miRNA:   3'- -UGuUUGUUCGuUUGgCUCACGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 49930 0.69 0.986414
Target:  5'- uGC-AACAAGUuGGCaGAGUGUGCCUGu -3'
miRNA:   3'- -UGuUUGUUCGuUUGgCUCACGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 329760 0.69 0.986414
Target:  5'- uGCGAACAcgaucgcuGCugcGCCGAGgcGUGCCCGg -3'
miRNA:   3'- -UGUUUGUu-------CGuu-UGGCUCa-CGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 305378 0.69 0.986414
Target:  5'- gGCAAaggGCAAGCAGACCGAaucCGCCa- -3'
miRNA:   3'- -UGUU---UGUUCGUUUGGCUcacGCGGgc -5'
10342 5' -51.8 NC_002687.1 + 194488 0.69 0.987941
Target:  5'- aGCGGgcGCAGGCGGACgGcguugacagcAGUGCGCUCa -3'
miRNA:   3'- -UGUU--UGUUCGUUUGgC----------UCACGCGGGc -5'
10342 5' -51.8 NC_002687.1 + 55572 0.69 0.987941
Target:  5'- gACGAACAguagucgauGGCcuuGGCCGGGUugGUGCCUGg -3'
miRNA:   3'- -UGUUUGU---------UCGu--UUGGCUCA--CGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 238670 0.69 0.990351
Target:  5'- cGCcGACAAGCGucgGGCCGAGaucggagccaggGUGCCCu -3'
miRNA:   3'- -UGuUUGUUCGU---UUGGCUCa-----------CGCGGGc -5'
10342 5' -51.8 NC_002687.1 + 139442 0.69 0.990594
Target:  5'- gACAAcguCAAcGCAuGCCGGGUGCgGUCCa -3'
miRNA:   3'- -UGUUu--GUU-CGUuUGGCUCACG-CGGGc -5'
10342 5' -51.8 NC_002687.1 + 307429 0.69 0.990594
Target:  5'- cGCAGGgAuacGGC--GCCGcGUGCGCCCa -3'
miRNA:   3'- -UGUUUgU---UCGuuUGGCuCACGCGGGc -5'
10342 5' -51.8 NC_002687.1 + 146675 0.69 0.990594
Target:  5'- gGCGAGUggGUAGACCGucGGUGgGUCCa -3'
miRNA:   3'- -UGUUUGuuCGUUUGGC--UCACgCGGGc -5'
10342 5' -51.8 NC_002687.1 + 168523 0.68 0.991736
Target:  5'- aGCAAACAGGCGAAUCGGuacUGCGaacugguaCCGu -3'
miRNA:   3'- -UGUUUGUUCGUUUGGCUc--ACGCg-------GGC- -5'
10342 5' -51.8 NC_002687.1 + 41383 0.68 0.994517
Target:  5'- cGCGAGCc-GCAAGCCGugucgauguuGGUGUGCCg- -3'
miRNA:   3'- -UGUUUGuuCGUUUGGC----------UCACGCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.