miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10349 3' -53.9 NC_002687.1 + 223121 0.66 0.996402
Target:  5'- cCUGGCCgaguguACUGcCUGUGaCGAGUaaGCu -3'
miRNA:   3'- -GACCGG------UGGCuGAUACaGCUCAgaCG- -5'
10349 3' -53.9 NC_002687.1 + 148259 0.66 0.996402
Target:  5'- gUGGCUACCG-CUGgg-CucGUCUGCc -3'
miRNA:   3'- gACCGGUGGCuGAUacaGcuCAGACG- -5'
10349 3' -53.9 NC_002687.1 + 197530 0.66 0.996402
Target:  5'- cCUGGCCgaguguACUGcCUGUGaCGAGUaaGCu -3'
miRNA:   3'- -GACCGG------UGGCuGAUACaGCUCAgaCG- -5'
10349 3' -53.9 NC_002687.1 + 269245 0.66 0.996402
Target:  5'- cCUGGCCgaguguACUGcCUGUGaCGAGUaaGCu -3'
miRNA:   3'- -GACCGG------UGGCuGAUACaGCUCAgaCG- -5'
10349 3' -53.9 NC_002687.1 + 181619 0.66 0.995826
Target:  5'- gCUGGCUuuGCCGGCUuuuUGcCGGcUUUGCu -3'
miRNA:   3'- -GACCGG--UGGCUGAu--ACaGCUcAGACG- -5'
10349 3' -53.9 NC_002687.1 + 329715 0.66 0.994448
Target:  5'- cCUGGUCGCCGAaacaGUCGuAGacccgCUGCc -3'
miRNA:   3'- -GACCGGUGGCUgauaCAGC-UCa----GACG- -5'
10349 3' -53.9 NC_002687.1 + 203677 0.66 0.992724
Target:  5'- --cGUgGCCGACUGUGUCgccccggaagaaGAGUCgaacgGCa -3'
miRNA:   3'- gacCGgUGGCUGAUACAG------------CUCAGa----CG- -5'
10349 3' -53.9 NC_002687.1 + 55216 0.66 0.992724
Target:  5'- -aGGCCAUCGACUAcUGUUc-GUCgGCc -3'
miRNA:   3'- gaCCGGUGGCUGAU-ACAGcuCAGaCG- -5'
10349 3' -53.9 NC_002687.1 + 277145 0.67 0.991821
Target:  5'- aUGGCCGCCGACgaggcagcgcgCGGGgcuUUUGCu -3'
miRNA:   3'- gACCGGUGGCUGauaca------GCUC---AGACG- -5'
10349 3' -53.9 NC_002687.1 + 241798 0.67 0.990599
Target:  5'- uUGGCgacggugcaCGCCGAaa--GUUGGGUCUGCc -3'
miRNA:   3'- gACCG---------GUGGCUgauaCAGCUCAGACG- -5'
10349 3' -53.9 NC_002687.1 + 112733 0.67 0.990599
Target:  5'- -aGGCCAgaGACgccGUCGAgGUCUGg -3'
miRNA:   3'- gaCCGGUggCUGauaCAGCU-CAGACg -5'
10349 3' -53.9 NC_002687.1 + 77707 0.67 0.990599
Target:  5'- -cGGCCGCCG-CgaaugAUGgugCGGGUUUGg -3'
miRNA:   3'- gaCCGGUGGCuGa----UACa--GCUCAGACg -5'
10349 3' -53.9 NC_002687.1 + 33629 0.67 0.989874
Target:  5'- aUGGCacccUCGuCUGUGUCGAGguuguguacguacauUCUGCg -3'
miRNA:   3'- gACCGgu--GGCuGAUACAGCUC---------------AGACG- -5'
10349 3' -53.9 NC_002687.1 + 162714 0.67 0.986529
Target:  5'- cCUGaCCACUG-CguUGUCgGAGUCUGCg -3'
miRNA:   3'- -GACcGGUGGCuGauACAG-CUCAGACG- -5'
10349 3' -53.9 NC_002687.1 + 284617 0.67 0.986529
Target:  5'- -cGGCUGCCGAaugcUGUCGAcaacgGUUUGCu -3'
miRNA:   3'- gaCCGGUGGCUgau-ACAGCU-----CAGACG- -5'
10349 3' -53.9 NC_002687.1 + 11263 0.67 0.986529
Target:  5'- gCUGGCCGCgguccUGugUGUGUCGuGgacgGCg -3'
miRNA:   3'- -GACCGGUG-----GCugAUACAGCuCaga-CG- -5'
10349 3' -53.9 NC_002687.1 + 19776 0.67 0.986529
Target:  5'- aUGGCUACCuc-----UCGAGUCUGCu -3'
miRNA:   3'- gACCGGUGGcugauacAGCUCAGACG- -5'
10349 3' -53.9 NC_002687.1 + 195611 0.67 0.986529
Target:  5'- aUGGCUACCuc-----UCGAGUCUGCu -3'
miRNA:   3'- gACCGGUGGcugauacAGCUCAGACG- -5'
10349 3' -53.9 NC_002687.1 + 221202 0.67 0.986529
Target:  5'- aUGGCUACCuc-----UCGAGUCUGCu -3'
miRNA:   3'- gACCGGUGGcugauacAGCUCAGACG- -5'
10349 3' -53.9 NC_002687.1 + 205494 0.69 0.971904
Target:  5'- gUGGUCGUCGAUcagGUCGAuGUCUGCc -3'
miRNA:   3'- gACCGGUGGCUGauaCAGCU-CAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.