Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 223446 | 0.67 | 0.992422 |
Target: 5'- -cGCugGAgggAGACGGgUGAcgGugGUGCu -3' miRNA: 3'- uaCGugCU---UCUGCCaGCUa-CugCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 206830 | 0.67 | 0.988955 |
Target: 5'- uGUGC-CGGAGACGGUggCGAaGAgGCcaGCa -3' miRNA: 3'- -UACGuGCUUCUGCCA--GCUaCUgCG--CG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 303907 | 0.66 | 0.995636 |
Target: 5'- -aGCuGCGAAGACGGgcccaGAUgcGACGUGg -3' miRNA: 3'- uaCG-UGCUUCUGCCag---CUA--CUGCGCg -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 97602 | 0.67 | 0.992422 |
Target: 5'- gGUGCugGGgauGACGccguacagUGAUGACGUGCc -3' miRNA: 3'- -UACGugCUu--CUGCca------GCUACUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 42304 | 0.67 | 0.988955 |
Target: 5'- gAUGUugGAgGGAUGGUCGGU--CGCaGCg -3' miRNA: 3'- -UACGugCU-UCUGCCAGCUAcuGCG-CG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 310843 | 0.65 | 0.996714 |
Target: 5'- cGUGCGCGcAGAauuuggcagcgaaUGGUCcggGGCGCGUg -3' miRNA: 3'- -UACGUGCuUCU-------------GCCAGcuaCUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 58117 | 0.68 | 0.98603 |
Target: 5'- -aGU-CGAGGGCGGcCGA--GCGCGCc -3' miRNA: 3'- uaCGuGCUUCUGCCaGCUacUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 226808 | 0.68 | 0.984361 |
Target: 5'- gGUGC-CGguGGCGGUgGcgGugGCGg -3' miRNA: 3'- -UACGuGCuuCUGCCAgCuaCugCGCg -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 275453 | 0.67 | 0.991379 |
Target: 5'- uUGUACGcGAGcUGGUCGA--GCGCGUg -3' miRNA: 3'- uACGUGC-UUCuGCCAGCUacUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 267829 | 0.67 | 0.988955 |
Target: 5'- gGUGgAC--AGGCGGUCGucuGUGgaGCGCGCg -3' miRNA: 3'- -UACgUGcuUCUGCCAGC---UAC--UGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 118269 | 0.67 | 0.990226 |
Target: 5'- -gGUAgGAAGACGa-CGGUGcCGCGCc -3' miRNA: 3'- uaCGUgCUUCUGCcaGCUACuGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 139769 | 0.67 | 0.988955 |
Target: 5'- aAUGCgGCGAgguauacccacAGugGGUCGAUcGACGUa- -3' miRNA: 3'- -UACG-UGCU-----------UCugCCAGCUA-CUGCGcg -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 73340 | 0.67 | 0.990226 |
Target: 5'- uAUGCucCGGAGACGGU-GAcGGCGacaGCa -3' miRNA: 3'- -UACGu-GCUUCUGCCAgCUaCUGCg--CG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 182237 | 0.71 | 0.933416 |
Target: 5'- -gGCACGGAGAUggGGUCGA-GGgGCGa -3' miRNA: 3'- uaCGUGCUUCUG--CCAGCUaCUgCGCg -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 308631 | 0.66 | 0.994207 |
Target: 5'- -cGCGCGGAGAgaccUGGUCugggguGGUGAgGgGCg -3' miRNA: 3'- uaCGUGCUUCU----GCCAG------CUACUgCgCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 200797 | 0.72 | 0.881066 |
Target: 5'- cUGCACcGAGGCGcaCGAgGGCGCGCa -3' miRNA: 3'- uACGUGcUUCUGCcaGCUaCUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 329985 | 0.75 | 0.763149 |
Target: 5'- gGUGCGCgugggagacccugguGAAGAUGcGUCGAUGGCGCaaGCa -3' miRNA: 3'- -UACGUG---------------CUUCUGC-CAGCUACUGCG--CG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 80484 | 0.76 | 0.722038 |
Target: 5'- uUGUGCGcuGAUGGUCGucgauccUGACGCGCa -3' miRNA: 3'- uACGUGCuuCUGCCAGCu------ACUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 151378 | 0.66 | 0.994207 |
Target: 5'- -cGCAUGGAaaACGGUCGAUGgACGUu- -3' miRNA: 3'- uaCGUGCUUc-UGCCAGCUAC-UGCGcg -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 167463 | 1.09 | 0.010848 |
Target: 5'- aAUGCACGAAGACGGUCGAUGACGCGCc -3' miRNA: 3'- -UACGUGCUUCUGCCAGCUACUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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