miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10349 5' -53.8 NC_002687.1 + 76918 0.74 0.803891
Target:  5'- gAUGCGCGAAGACuGUCGGUGAUugaaaCGUu -3'
miRNA:   3'- -UACGUGCUUCUGcCAGCUACUGc----GCG- -5'
10349 5' -53.8 NC_002687.1 + 267829 0.67 0.988955
Target:  5'- gGUGgAC--AGGCGGUCGucuGUGgaGCGCGCg -3'
miRNA:   3'- -UACgUGcuUCUGCCAGC---UAC--UGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 223446 0.67 0.992422
Target:  5'- -cGCugGAgggAGACGGgUGAcgGugGUGCu -3'
miRNA:   3'- uaCGugCU---UCUGCCaGCUa-CugCGCG- -5'
10349 5' -53.8 NC_002687.1 + 310843 0.65 0.996714
Target:  5'- cGUGCGCGcAGAauuuggcagcgaaUGGUCcggGGCGCGUg -3'
miRNA:   3'- -UACGUGCuUCU-------------GCCAGcuaCUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 224128 0.7 0.946915
Target:  5'- -cGCugGcgcuGGCGGUgGcgGugGCGCu -3'
miRNA:   3'- uaCGugCuu--CUGCCAgCuaCugCGCG- -5'
10349 5' -53.8 NC_002687.1 + 224093 0.69 0.965139
Target:  5'- gGUGCugGcGGACGuUCGG-GACGCGg -3'
miRNA:   3'- -UACGugCuUCUGCcAGCUaCUGCGCg -5'
10349 5' -53.8 NC_002687.1 + 24496 0.69 0.971015
Target:  5'- -cGCGCGAcccuuccaccaAGGCGGcCaaGUGAUGCGCu -3'
miRNA:   3'- uaCGUGCU-----------UCUGCCaGc-UACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 119445 0.68 0.975905
Target:  5'- -aGCAguaacgacacacuCGAAGACGcGUCGGUGAUGguguCGCu -3'
miRNA:   3'- uaCGU-------------GCUUCUGC-CAGCUACUGC----GCG- -5'
10349 5' -53.8 NC_002687.1 + 223489 0.68 0.980576
Target:  5'- gAUGCggugGCGggGGCGGgggaagccgUGGUGGCGacaGCa -3'
miRNA:   3'- -UACG----UGCuuCUGCCa--------GCUACUGCg--CG- -5'
10349 5' -53.8 NC_002687.1 + 206830 0.67 0.988955
Target:  5'- uGUGC-CGGAGACGGUggCGAaGAgGCcaGCa -3'
miRNA:   3'- -UACGuGCUUCUGCCA--GCUaCUgCG--CG- -5'
10349 5' -53.8 NC_002687.1 + 226808 0.68 0.984361
Target:  5'- gGUGC-CGguGGCGGUgGcgGugGCGg -3'
miRNA:   3'- -UACGuGCuuCUGCCAgCuaCugCGCg -5'
10349 5' -53.8 NC_002687.1 + 18323 0.68 0.980576
Target:  5'- cUGCuuCGggGGCGGgCGGUGAUGacaGUg -3'
miRNA:   3'- uACGu-GCuuCUGCCaGCUACUGCg--CG- -5'
10349 5' -53.8 NC_002687.1 + 27958 0.72 0.906505
Target:  5'- uGUGCGCGAuGAUGGUacUGGUGACgGUGUu -3'
miRNA:   3'- -UACGUGCUuCUGCCA--GCUACUG-CGCG- -5'
10349 5' -53.8 NC_002687.1 + 58117 0.68 0.98603
Target:  5'- -aGU-CGAGGGCGGcCGA--GCGCGCc -3'
miRNA:   3'- uaCGuGCUUCUGCCaGCUacUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 173620 0.7 0.942634
Target:  5'- -gGCggagGCGggGGCGGagGcgGACGCGg -3'
miRNA:   3'- uaCG----UGCuuCUGCCagCuaCUGCGCg -5'
10349 5' -53.8 NC_002687.1 + 295700 0.68 0.978444
Target:  5'- gGUGCAgCGGAGcaGCGGggcUGAUGcCGUGCa -3'
miRNA:   3'- -UACGU-GCUUC--UGCCa--GCUACuGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 42304 0.67 0.988955
Target:  5'- gAUGUugGAgGGAUGGUCGGU--CGCaGCg -3'
miRNA:   3'- -UACGugCU-UCUGCCAGCUAcuGCG-CG- -5'
10349 5' -53.8 NC_002687.1 + 275453 0.67 0.991379
Target:  5'- uUGUACGcGAGcUGGUCGA--GCGCGUg -3'
miRNA:   3'- uACGUGC-UUCuGCCAGCUacUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 243501 0.7 0.946915
Target:  5'- -aGCAUGGgguggcGGACGGaUCGAccACGCGCu -3'
miRNA:   3'- uaCGUGCU------UCUGCC-AGCUacUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 224189 0.69 0.968173
Target:  5'- aGUGCugGu-GGCGGUgGcgGugGCGg -3'
miRNA:   3'- -UACGugCuuCUGCCAgCuaCugCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.