miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10349 5' -53.8 NC_002687.1 + 167463 1.09 0.010848
Target:  5'- aAUGCACGAAGACGGUCGAUGACGCGCc -3'
miRNA:   3'- -UACGUGCUUCUGCCAGCUACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 80484 0.76 0.722038
Target:  5'- uUGUGCGcuGAUGGUCGucgauccUGACGCGCa -3'
miRNA:   3'- uACGUGCuuCUGCCAGCu------ACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 329985 0.75 0.763149
Target:  5'- gGUGCGCgugggagacccugguGAAGAUGcGUCGAUGGCGCaaGCa -3'
miRNA:   3'- -UACGUG---------------CUUCUGC-CAGCUACUGCG--CG- -5'
10349 5' -53.8 NC_002687.1 + 76918 0.74 0.803891
Target:  5'- gAUGCGCGAAGACuGUCGGUGAUugaaaCGUu -3'
miRNA:   3'- -UACGUGCUUCUGcCAGCUACUGc----GCG- -5'
10349 5' -53.8 NC_002687.1 + 200797 0.72 0.881066
Target:  5'- cUGCACcGAGGCGcaCGAgGGCGCGCa -3'
miRNA:   3'- uACGUGcUUCUGCcaGCUaCUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 27958 0.72 0.906505
Target:  5'- uGUGCGCGAuGAUGGUacUGGUGACgGUGUu -3'
miRNA:   3'- -UACGUGCUuCUGCCA--GCUACUG-CGCG- -5'
10349 5' -53.8 NC_002687.1 + 182237 0.71 0.933416
Target:  5'- -gGCACGGAGAUggGGUCGA-GGgGCGa -3'
miRNA:   3'- uaCGUGCUUCUG--CCAGCUaCUgCGCg -5'
10349 5' -53.8 NC_002687.1 + 173620 0.7 0.942634
Target:  5'- -gGCggagGCGggGGCGGagGcgGACGCGg -3'
miRNA:   3'- uaCG----UGCuuCUGCCagCuaCUGCGCg -5'
10349 5' -53.8 NC_002687.1 + 79624 0.7 0.942634
Target:  5'- gGUGUugGAuGA-GGcCGAcgUGACGCGCa -3'
miRNA:   3'- -UACGugCUuCUgCCaGCU--ACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 154527 0.7 0.942634
Target:  5'- -gGCGCGuuGGUGGccaUGGUGACGCGCg -3'
miRNA:   3'- uaCGUGCuuCUGCCa--GCUACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 224128 0.7 0.946915
Target:  5'- -cGCugGcgcuGGCGGUgGcgGugGCGCu -3'
miRNA:   3'- uaCGugCuu--CUGCCAgCuaCugCGCG- -5'
10349 5' -53.8 NC_002687.1 + 243501 0.7 0.946915
Target:  5'- -aGCAUGGgguggcGGACGGaUCGAccACGCGCu -3'
miRNA:   3'- uaCGUGCU------UCUGCC-AGCUacUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 307814 0.69 0.961907
Target:  5'- cUG-AUGggGACGG-CGGUGACG-GCg -3'
miRNA:   3'- uACgUGCuuCUGCCaGCUACUGCgCG- -5'
10349 5' -53.8 NC_002687.1 + 224093 0.69 0.965139
Target:  5'- gGUGCugGcGGACGuUCGG-GACGCGg -3'
miRNA:   3'- -UACGugCuUCUGCcAGCUaCUGCGCg -5'
10349 5' -53.8 NC_002687.1 + 224189 0.69 0.968173
Target:  5'- aGUGCugGu-GGCGGUgGcgGugGCGg -3'
miRNA:   3'- -UACGugCuuCUGCCAgCuaCugCGCg -5'
10349 5' -53.8 NC_002687.1 + 24496 0.69 0.971015
Target:  5'- -cGCGCGAcccuuccaccaAGGCGGcCaaGUGAUGCGCu -3'
miRNA:   3'- uaCGUGCU-----------UCUGCCaGc-UACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 119445 0.68 0.975905
Target:  5'- -aGCAguaacgacacacuCGAAGACGcGUCGGUGAUGguguCGCu -3'
miRNA:   3'- uaCGU-------------GCUUCUGC-CAGCUACUGC----GCG- -5'
10349 5' -53.8 NC_002687.1 + 295700 0.68 0.978444
Target:  5'- gGUGCAgCGGAGcaGCGGggcUGAUGcCGUGCa -3'
miRNA:   3'- -UACGU-GCUUC--UGCCa--GCUACuGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 18323 0.68 0.980576
Target:  5'- cUGCuuCGggGGCGGgCGGUGAUGacaGUg -3'
miRNA:   3'- uACGu-GCuuCUGCCaGCUACUGCg--CG- -5'
10349 5' -53.8 NC_002687.1 + 76958 0.68 0.980576
Target:  5'- -aGCACGAGGcACGG-C-AUGuACGUGCg -3'
miRNA:   3'- uaCGUGCUUC-UGCCaGcUAC-UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.