miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10349 5' -53.8 NC_002687.1 + 18323 0.68 0.980576
Target:  5'- cUGCuuCGggGGCGGgCGGUGAUGacaGUg -3'
miRNA:   3'- uACGu-GCuuCUGCCaGCUACUGCg--CG- -5'
10349 5' -53.8 NC_002687.1 + 24496 0.69 0.971015
Target:  5'- -cGCGCGAcccuuccaccaAGGCGGcCaaGUGAUGCGCu -3'
miRNA:   3'- uaCGUGCU-----------UCUGCCaGc-UACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 27958 0.72 0.906505
Target:  5'- uGUGCGCGAuGAUGGUacUGGUGACgGUGUu -3'
miRNA:   3'- -UACGUGCUuCUGCCA--GCUACUG-CGCG- -5'
10349 5' -53.8 NC_002687.1 + 42304 0.67 0.988955
Target:  5'- gAUGUugGAgGGAUGGUCGGU--CGCaGCg -3'
miRNA:   3'- -UACGugCU-UCUGCCAGCUAcuGCG-CG- -5'
10349 5' -53.8 NC_002687.1 + 58117 0.68 0.98603
Target:  5'- -aGU-CGAGGGCGGcCGA--GCGCGCc -3'
miRNA:   3'- uaCGuGCUUCUGCCaGCUacUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 73340 0.67 0.990226
Target:  5'- uAUGCucCGGAGACGGU-GAcGGCGacaGCa -3'
miRNA:   3'- -UACGu-GCUUCUGCCAgCUaCUGCg--CG- -5'
10349 5' -53.8 NC_002687.1 + 76918 0.74 0.803891
Target:  5'- gAUGCGCGAAGACuGUCGGUGAUugaaaCGUu -3'
miRNA:   3'- -UACGUGCUUCUGcCAGCUACUGc----GCG- -5'
10349 5' -53.8 NC_002687.1 + 76958 0.68 0.980576
Target:  5'- -aGCACGAGGcACGG-C-AUGuACGUGCg -3'
miRNA:   3'- uaCGUGCUUC-UGCCaGcUAC-UGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 78418 0.66 0.996235
Target:  5'- -aGCAcCGAGGcCGGUCacggguuUGAgGCGCu -3'
miRNA:   3'- uaCGU-GCUUCuGCCAGcu-----ACUgCGCG- -5'
10349 5' -53.8 NC_002687.1 + 79624 0.7 0.942634
Target:  5'- gGUGUugGAuGA-GGcCGAcgUGACGCGCa -3'
miRNA:   3'- -UACGugCUuCUgCCaGCU--ACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 80484 0.76 0.722038
Target:  5'- uUGUGCGcuGAUGGUCGucgauccUGACGCGCa -3'
miRNA:   3'- uACGUGCuuCUGCCAGCu------ACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 84838 0.66 0.996235
Target:  5'- cGUGCguugugGCGuuguAGGCgaGGUCGAUcucuuuguccucGACGCGCa -3'
miRNA:   3'- -UACG------UGCu---UCUG--CCAGCUA------------CUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 97602 0.67 0.992422
Target:  5'- gGUGCugGGgauGACGccguacagUGAUGACGUGCc -3'
miRNA:   3'- -UACGugCUu--CUGCca------GCUACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 103294 0.66 0.996178
Target:  5'- -aGgACGAGGACcuGGUCGcgGACGaauccuuCGCc -3'
miRNA:   3'- uaCgUGCUUCUG--CCAGCuaCUGC-------GCG- -5'
10349 5' -53.8 NC_002687.1 + 107543 0.68 0.984187
Target:  5'- -cGCAUGAacguucccaucaaGGugGcucUCGGUGGCGUGCg -3'
miRNA:   3'- uaCGUGCU-------------UCugCc--AGCUACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 115951 0.66 0.995636
Target:  5'- uUGCGgGAAGACGGUCuGUGuugauaucuUGUGUa -3'
miRNA:   3'- uACGUgCUUCUGCCAGcUACu--------GCGCG- -5'
10349 5' -53.8 NC_002687.1 + 118185 0.68 0.98603
Target:  5'- cUGCgucgaACGAGGACGa-CGGUGcCGCGCc -3'
miRNA:   3'- uACG-----UGCUUCUGCcaGCUACuGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 118269 0.67 0.990226
Target:  5'- -gGUAgGAAGACGa-CGGUGcCGCGCc -3'
miRNA:   3'- uaCGUgCUUCUGCcaGCUACuGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 119445 0.68 0.975905
Target:  5'- -aGCAguaacgacacacuCGAAGACGcGUCGGUGAUGguguCGCu -3'
miRNA:   3'- uaCGU-------------GCUUCUGC-CAGCUACUGC----GCG- -5'
10349 5' -53.8 NC_002687.1 + 139769 0.67 0.988955
Target:  5'- aAUGCgGCGAgguauacccacAGugGGUCGAUcGACGUa- -3'
miRNA:   3'- -UACG-UGCU-----------UCugCCAGCUA-CUGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.